| 1 | 6 | June-Reg | Geoff Goetz | P | 18 | 5-11 | 165 | L | L | AA | | Jesuit (Tampa,FL) | $1,700,000 |
| 2 | 58 | June-Reg | Tyler Walker | P | 21 | 6-3 | 237 | R | R | MLB | 2002-2009 | University of California | |
| 3 | 90 | June-Reg | Cesar Crespo | SS | 18 | 5-11 | 170 | B | R | MLB | 2001-2004 | Notre Dame (Caguas,PR) | |
| 4 | 120 | June-Reg | Michael Yancy | OF | 18 | 5-11 | 195 | R | R | A | | Morse (San Diego,CA) | |
| 5 | 150 | June-Reg | Brian Jenkins | C | 18 | 5-11 | 210 | R | R | AA | | Port St. Joe (Port St. Joe,FL) | |
| 6 | 180 | June-Reg | Matt Lowe | P | 18 | 6-4 | 220 | R | R | A | | Walhalla (Walhalla,SC) | |
| 7 | 210 | June-Reg | Rob Weslowski | P | 18 | 6-2 | 180 | R | R | A+ | | Marcellus Central (Marcellus,NY) | |
| 8 | 240 | June-Reg | Vicente Rosario | OF | 19 | 5-9 | 180 | R | R | A- | | George Washington (New York,NY) | |
| 9 | 270 | June-Reg | Kenny Miller | SS | 21 | 5-11 | 170 | R | R | A+ | | University of Kentucky | |
| 10 | 300** | June-Reg | Garrett Atkins | 3B | 17 | 6-3 | 210 | R | R | MLB | 2003-2009 | University (Irvine,CA) | |
| 11 | 330 | June-Reg | John Mangieri | P | 20 | 6-2 | 200 | R | R | A+ | | St. Francis College | |
| 12 | 360 | June-Reg | Nick Maness | p | 18 | 6-4 | 210 | R | R | AAA | | North Moore (Robbins,NC) | |
| 13 | 390 | June-Reg | Eric Cammack | p | 21 | 6-1 | 180 | R | R | MLB | 2000-2000 | Lamar University | |
| 14 | 420** | June-Reg | Craig Kuzmic | C | 20 | 6-1 | 195 | B | R | AAA | | Cypress College | |
| 15 | 450 | June-Reg | Jeremy Guthrie | p | 18 | 6-1 | 200 | B | R | MLB | 2004-2009 | Ashland (Ashland,OR) | |
| 16 | 480 | June-Reg | Mark Proctor | SS | 17 | 6-3 | 180 | R | R | Rookie | | Courtland (Fredericksburg,VA) | |
| 17 | 510 | June-Reg | Bobby Hill | SS | 18 | 5-9 | 165 | L | R | A+ | | Gainesville (Gainesville,GA) | |
| 18 | 540** | June-Reg | Dominic Rich | 2B | 17 | 5-10 | 190 | L | R | AA | | Line Mountain (Herndon,PA) | |
| 19 | 570 | June-Reg | Nick Rains | OF | | | | | | Rookie | | Carroll (Fort Pierce,FL) | |
| 20 | 600 | June-Reg | Jason Roach | 3B | 21 | 6-4 | 198 | R | R | MLB | 2003-2003 | University of North Carolina at Wilmington | |
| 21 | 630 | June-Reg | Jason Brett | SS | 20 | 6-0 | 175 | R | R | A+ | | South Georgia College | |
| 22 | 660 | June-Reg | Marcellus Presley | OF | | | 0 | | | - | | Johnson (Sacramento,CA) | |
| 23 | 690** | June-Reg | Seth Davidson | SS | 18 | 6-0 | 170 | B | R | AA | | University of San Diego (San Diego,CA) | |
| 24 | 720 | June-Reg | Jason Phillips | C | 20 | 6-1 | 180 | R | R | MLB | 2001-2007 | San Diego State University | |
| 25 | 750 | June-Reg | James Mayfield | p | 18 | 6-7 | 220 | R | R | A- | | Jefferson State Community College | |
| 26 | 780 | June-Reg | J.D. Arteaga | p | 22 | 6-3 | 227 | L | L | AAA | | University of Miami | |
| 27 | 810 | June-Reg | Matt Ardizzone | 2B | | | | | | Rookie | | University of Delaware | |
| 28 | 840** | June-Reg | Tony Brown | OF | 17 | 6-1 | 190 | B | R | A | | A.I. Dupont (Wilmington,DE) | |
| 29 | 870 | June-Reg | Jose Rio-Berger | OF | | | | | | - | | Lewis-Clark State College | |
| 30 | 900 | June-Reg | Jason Shuck | SS | 18 | 5-11 | 165 | R | R | A+ | | Carl Albert State College | |
| 31 | 930 | June-Reg | Randy Hamilton | p | 19 | 6-3 | 190 | L | L | Rookie | | Northern Kentucky University | |
| 32 | 960 | June-Reg | Jorge Santiago | SS | | | | | | A- | | Marist College | |
| 33 | 990 | June-Reg | Shaun Mikkola | p | 17 | 6-1 | 190 | R | R | Ind | | Largo (Largo,FL) | |
| 34 | 1020 | June-Reg | Barry Paulk | Of | 18 | 5-10 | 180 | L | R | A | | | |
| 35 | 1050** | June-Reg | Miguel Miranda | SS | 18 | 6-0 | 175 | B | R | A | | Academy (Rio Piedras,PR) | |
| 36 | 1080 | June-Reg | Greg White | 1B | | | | | | - | | James Madison University | |
| 37 | 1110** | June-Reg | Brandon Lyon | p | 17 | 6-1 | 170 | R | R | MLB | 2001-2009 | Taylorsville (Salt Lake City,UT) | |
| 38 | 1140 | June-Reg | Barry Wichert | p | | | | | | - | | Seminole Community College | |
| 39 | 1170 | June-Reg | Robert Scott | 2B | | | | | | - | | Cowley College | |
| 40 | 1200** | June-Reg | Randy Keisler | p | 21 | 6-3 | 190 | L | L | MLB | 2000-2007 | Navarro College | |
| 41 | 1230** | June-Reg | David Benham | C | 21 | 6-2 | 187 | R | R | AA | | Liberty University | |
| 42 | 1257 | June-Reg | Dave Lohrman | p | 21 | 6-6 | 200 | R | R | AAA | | Rensselaer Polytechnic Institute | |
| 43 | 1281** | June-Reg | David DeJesus | of | 17 | 6-0 | 175 | L | L | MLB | 2003-2009 | Manalapan (Manalapan,NJ) | |
| 44 | 1304 | June-Reg | Kevin Zaug | p | 18 | 6-3 | 190 | R | R | Rookie | | Carmel (Carmel,NY) | |
| 45 | 1325 | June-Reg | Anthony Valentine | 2B | | | | | | A- | | University of New Hampshire | |
| 46 | 1345 | June-Reg | Jason Bowring | 3B | 20 | 6-1 | 190 | R | R | A- | | Riverside Community College | |
| 47 | 1364** | June-Reg | Tanner Brock | p | 18 | 6-3 | 190 | R | R | Rookie | | Lake Brantley (Altamonte Springs,FL) | |
| 48 | 1382 | June-Reg | Matt Whitehead | p | | | 0 | | | - | | Athens (Athens,TX) | |
| 49 | 1399 | June-Reg | Jeremy Jackson | p | 21 | 6-4 | 205 | L | L | A | | Mississippi State University | |
| 50 | 1416 | June-Reg | Mark Maberry | p | 22 | 6-3 | 200 | R | R | A+ | | Tennessee Technological University | |
| 51 | 1431 | June-Reg | Elvin Cannon | of | | | | | | - | | Northland (Columbus,OH) | |
| 52 | 1445** | June-Reg | Mike Tonis | C | 18 | 6-3 | 220 | R | R | MLB | 2004-2004 | Elk Grove (Caguas,PR) | |
| 53 | 1459 | June-Reg | Mathias Fafard | 3B | | | | | | Rookie | | Indian River State College | |
| 54 | 1472 | June-Reg | Anthony Sutter | SS | 19 | 6-0 | 185 | R | R | A | | Brookdale Community College | |
| 55 | 1483 | June-Reg | Brian Kuklick | p | | | | | | - | | Wake Forest University | |
| 56 | 1494 | June-Reg | Joshua Taylor | SS | 20 | 5-9 | 155 | R | R | A+ | | Cowley College | |
| 57 | 1505 | June-Reg | Clark Lambert | C | 22 | 6-0 | 195 | R | R | A+ | | Lipscomb University | |
| 58 | 1516** | June-Reg | Ryan LaMattina | p | 21 | 6-2 | 210 | L | L | A+ | | St. Bonaventure University | |