| 1 | 13 | June-Reg | Kyle Peterson | P | 21 | 6-3 | 220 | L | R | MLB | 1999-2001 | Stanford University | $1,400,000 |
| 2 | 65 | June-Reg | Alvin Morrow | OF | 19 | 6-4 | 240 | R | R | A+ | | Kirkwood (Kirkwood,MO) | |
| 3 | 97 | June-Reg | Jeff Deardorff | 3B | 18 | 6-3 | 220 | R | R | AAA | | South Lake (Groveland,FL) | |
| 4 | 127 | June-Reg | Tommy Warren | OF | 17 | 6-4 | 180 | B | R | Rookie | | Westchester (Los Angeles,CA) | |
| 5 | 157 | June-Reg | Frank Candela | OF | | | | | | A | | Peabody (Peabody,MA) | |
| 6 | 187 | June-Reg | Jake Eye | P | 22 | 6-1 | 205 | R | R | Rookie | | Ohio University | |
| 7 | 217 | June-Reg | Bucky Jacobsen | OF | 21 | 6-4 | 220 | R | R | MLB | 2004-2004 | Lewis-Clark State College | |
| 8 | 247 | June-Reg | Todd Incantalupo | P | 21 | 6-2 | 185 | L | L | A | | Providence College | |
| 9 | 277 | June-Reg | Matt Childers | P | 18 | 6-5 | 195 | R | R | MLB | 2002-2005 | Westside (Augusta,GA) | |
| 10 | 307 | June-Reg | Chris Patton | SS | | | | | | - | | McClintock (Tempe,AZ) | |
| 11 | 337 | June-Reg | Jim Miller | P | 21 | 6-6 | 195 | B | R | A+ | | Carthage College | |
| 12 | 367 | June-Reg | Kendal Guthrie | C | 21 | 6-1 | 195 | R | R | Rookie | | Northwood University | |
| 13 | 397 | June-Reg | Brent Kelley | p | 21 | 6-1 | 175 | R | R | Ind | | Arkansas State University | |
| 14 | 427 | June-Reg | Chris Rowan | 3B | 18 | 6-1 | 175 | R | R | A+ | | Mount Vernon (Mount Vernon,NY) | |
| 15 | 457 | June-Reg | Romaro Miller | SS | | | | | | - | | Shannon (Shannon,MS) | |
| 16 | 487 | June-Reg | Andy Cavanagh | p | 20 | 6-3 | 210 | R | R | Rookie | | Young Harris College | |
| 17 | 517 | June-Reg | Mark Kirst | p | 22 | 6-4 | 200 | R | R | A+ | | St Norbert's College | |
| 18 | 547 | June-Reg | Jay Akin | p | 22 | 6-2 | 200 | L | L | AA | | Arkansas State University | |
| 19 | 577 | June-Reg | Shane Wooten | p | 22 | 6-0 | 170 | B | L | A | | Birmingham-Southern College | |
| 20 | 607** | June-Reg | Doug Clark | OF | 21 | 6-2 | 200 | L | R | MLB | 2005-2006 | University of Massachusetts | |
| 21 | 637 | June-Reg | Mark Cridland | OF | 22 | 6-3 | 205 | L | R | AA | | University of Texas | |
| 22 | 667** | June-Reg | Charlie Manning | p | 18 | 6-2 | 180 | L | L | MLB | 2008-2008 | Winter Haven (Winter Haven,FL) | |
| 23 | 697 | June-Reg | Kevin Priebe | p | 22 | 6-2 | 225 | R | L | AA | | Bradley University | |
| 24 | 727 | June-Reg | Robby Baker | p | 19 | 6-5 | 200 | | R | - | | Blinn College | |
| 25 | 757 | June-Reg | Steve Beller | p | 22 | 6-4 | 235 | R | R | Ind | | West Virginia University | |
| 26 | 787 | June-Reg | Trad Sokol | p | 20 | 6-1 | 185 | R | L | Ind | | Frederick Community College | |
| 27 | 817 | June-Reg | Brian Mallette | p | 22 | 6-0 | 185 | R | R | MLB | 2002-2002 | Columbus State University | |
| 28 | 847 | June-Reg | Marty Patterson | C | 22 | 6-2 | 200 | R | R | Rookie | | Michigan State University | |
| 29 | 877** | June-Reg | Al Corbeil | C | 18 | 6-0 | 190 | L | R | A+ | | Plantation (Plantation,FL) | |
| 30 | 907 | June-Reg | Brian Fields | p | 22 | 6-1 | 175 | R | L | A+ | | East Carolina University | |
| 31 | 937 | June-Reg | Chauncey Jones | p | 21 | 6-1 | 195 | R | R | Rookie | | Briarcliffe College | |
| 32 | 967 | June-Reg | Gary McConnell | p | 19 | 6-3 | 190 | R | R | Rookie | | North Florida Community College | |
| 33 | 997 | June-Reg | Arthur Garland | p | | | 0 | | | - | | Magnolia (Anaheim,CA) | |
| 34 | 1027 | June-Reg | James Igo | p | | | | | | - | | Galveston College | |
| 35 | 1057** | June-Reg | Ryan Costello | p | 17 | 6-6 | 215 | R | L | AA | | Eastern (Voorhees,NJ) | |
| 36 | 1087 | June-Reg | Chad Helmer | p | 21 | 6-4 | 195 | R | R | AA | | Florida Southern College | |
| 37 | 1117** | June-Reg | Landon Jacobsen | p | 18 | 6-3 | 203 | R | R | AAA | | Howard (Canova,SD) | |
| 38 | 1147 | June-Reg | Randy Rodriguez | | | | | | | - | | Indian River State College | |
| 39 | 1177 | June-Reg | Joel Arroyo | p | 20 | 6-0 | 208 | R | R | Ind | | Saint Leo University | |
| 40 | 1207 | June-Reg | Robert Riggio | 3B | 21 | 6-1 | 195 | R | R | Rookie | | Lehman College, City University of New York | |
| 41 | 1236** | June-Reg | Geoff Geary | p | 20 | 6-0 | 176 | R | R | MLB | 2003-2009 | University of Oklahoma | |
| 42 | 1263 | June-Reg | Justin Ames | p | 17 | 6-4 | 180 | L | L | - | | Moorpark (Moorpark,CA) | |
| 43 | 1287 | June-Reg | Ryan Pearson | of | 22 | 6-2 | 215 | B | R | Rookie | | Troy University | |
| 44 | 1309 | June-Reg | Marcus Quinones | p | 21 | 6-1 | 190 | B | R | A+ | | Lee College | |
| 45 | 1330 | June-Reg | Nick Caiazzo | C | 22 | 6-4 | 215 | R | R | A+ | | | |
| 46 | 1350 | June-Reg | Eric Tomlinson | of | | | | | | College | | Granbury (Granbury,TX) | |
| 47 | 1369 | June-Reg | Jeff Savage | p | | | | | | - | | Palm Beach Gardens (Palm Beach Gardens,FL) | |
| 48 | 1387 | June-Reg | Oscar Ramirez | SS | | | | | | - | | | |
| 49 | 1404 | June-Reg | Nick Quinn | of | | | | | | - | | | |
| 50 | 1420 | June-Reg | Jimmy Smith | of | | | | | | - | | Lake Mary (Lake Mary,FL) | |
| 51 | 1435 | June-Reg | Jose Camilo | 2B | | | | | | - | | North Florida Community College | |
| 52 | 1449 | June-Reg | Michael Oiler | SS | | | | | | - | | Watertown (Watertown,WI) | |
| 53 | 1463 | June-Reg | Bennie Harris | of | | | | | | - | | Myers Park (Charlotte,NC) | |