| 1 | 26 | June-Reg | Josh Garrett | P | 18 | 6-4 | 205 | R | R | AA | | South Spencer (Rockport,IN) | $665,000 |
| 1 | 34 | June-Reg | Chris Reitsma | P | 18 | 6-5 | 214 | R | R | MLB | 2001-2007 | Calgary Christian (Calgary,AB) | $425,000 |
| 2 | 39 | June-Reg | Gary LoCurto | 1B | 18 | 6-1 | 200 | L | R | A | | University of San Diego (San Diego,CA) | $375,000 |
| 2 | 61 | June-Reg | Jason Sekany | P | 20 | 6-4 | 214 | R | R | AAA | | University of Virginia | |
| 3 | 91 | June-Reg | Dernell Stenson | OF | 18 | 6-1 | 215 | L | L | MLB | 2003-2003 | LaGrange (LaGrange,GA) | |
| 4 | 121 | June-Reg | John Barnes | OF | 20 | 6-2 | 205 | R | R | MLB | 2000-2001 | Grossmont College | |
| 5 | 151 | June-Reg | Bobby Brito | C | 18 | 5-9 | 180 | R | R | Rookie | | Cypress (Cypress,CA) | |
| 6 | 181 | June-Reg | Mike Perini | OF | 18 | 6-2 | 200 | L | R | A- | | | |
| 7 | 211 | June-Reg | Rob Ramsey | P | | | | | | - | | Washington State University | |
| 8 | 241 | June-Reg | Justin Duchscherer | P | 18 | 6-3 | 164 | R | R | MLB | 2001-2008 | Coronado (Lubbock,TX) | |
| 9 | 271 | June-Reg | Marcus Martinez | P | | | | | | Rookie | | Monterey (Lubbock,TX) | |
| 10 | 301 | June-Reg | Shea Hillenbrand | SS | 20 | 6-1 | 200 | R | R | MLB | 2001-2007 | Mesa Community College | |
| 11 | 331 | June-Reg | Scott Musgrave | P | 22 | 5-10 | 190 | L | L | A+ | | Appalachian State University | |
| 12 | 361 | June-Reg | Dion Ruecker | SS | 22 | 5-10 | 180 | R | R | A- | | Texas Tech University | |
| 13 | 391 | June-Reg | Skipp Benzing | p | 19 | 6-2 | 180 | L | R | A- | | Indian Hills Community College-Centerville | |
| 14 | 421 | June-Reg | Justin Lynch | p | | | | | | - | | Marina (Huntington Beach,CA) | |
| 15 | 451 | June-Reg | Mark Robbins | 3B | | | | | | - | | Derry (Derry,KS) | |
| 16 | 481 | June-Reg | Jeff Keaveney | 1B-OF | 20 | 6-5 | 240 | R | R | A | | University of Southern Maine | |
| 17 | 511 | June-Reg | Justin Crisafulli | p | | | | | | - | | Arizona Western College | |
| 18 | 541 | June-Reg | Mike McKinley | OF | 21 | 6-0 | 180 | R | R | A- | | Scottsdale Community College | |
| 19 | 571 | June-Reg | MIke Rupp | p | 18 | 6-3 | 205 | R | R | A+ | | Monte Vista (Spring Valley,CA) | |
| 20 | 601 | June-Reg | Chuck Beale | p | 22 | 6-0 | 210 | R | R | AA | | Stetson University | |
| 21 | 631 | June-Reg | Javier Fuentes | SS-2B | 21 | 6-1 | 182 | R | R | AA | | Arizona State University | |
| 22 | 661** | June-Reg | Aaron Harang | p | 18 | 6-7 | 240 | R | R | MLB | 2002-2009 | Patrick Henry (San Diego,CA) | |
| 23 | 691 | June-Reg | Paul McCurtain | p | 20 | 6-1 | 190 | R | R | AA | | Mesa Community College | |
| 24 | 721 | June-Reg | Robert Brandt | p | | | | | | - | | A&M Consolidated (College Station,TX) | |
| 25 | 751 | June-Reg | Dominic Barrett | OF | | 6-0 | 175 | R | R | - | | Trimble Technical (Fort Worth,TX) | |
| 26 | 781 | June-Reg | Chris Thompson | p | 23 | 6-2 | 202 | R | R | AAA | | Saint Leo University | |
| 27 | 811 | June-Reg | Ryan Murray | p | | | | | | - | | Tampa Bay Tech (Tampa,FL) | |
| 28 | 841 | June-Reg | Erik Metzger | C | 21 | 6-0 | 205 | R | R | A+ | | Samford University | |
| 29 | 871** | June-Reg | Josh Stewart | p | 17 | 6-3 | 205 | L | L | MLB | 2003-2004 | Livingston Central (Ledbetter,KY) | |
| 30 | 901 | June-Reg | William Whitaker | p | | | | | | - | | First Coast (Jacksonville,FL) | |
| 31 | 931 | June-Reg | Matt Frick | C | 20 | 6-2 | 220 | R | R | A+ | | Yavapai College | |
| 32 | 961** | June-Reg | Mike Bynum | ip | 18 | 6-4 | 200 | L | L | MLB | 2002-2004 | Middleburg (Middleburg,FL) | |
| 33 | 991 | June-Reg | Adam Roller | p | 18 | 6-3 | 208 | R | R | AA | | Lakeland (Lakeland,FL) | |
| 34 | 1021 | June-Reg | Jaime Bonilla | p | | | | | | - | | Lake City Community College | |
| 35 | 1051 | June-Reg | Kasey Kuhlmeyer | p | 17 | 6-0 | 190 | R | L | - | | San Pasqual (Escondido,CA) | |
| 36 | 1081 | June-Reg | Ken Sarna | SS | 18 | 6-2 | 195 | R | R | A- | | Durango (Las Vegas,NV) | |
| 37 | 1111 | June-Reg | Jeremy Swindell | p | 18 | 6-2 | 220 | L | L | A | | Clear Lake (Houston,TX) | |
| 38 | 1141 | June-Reg | Travis McRoberts | SS | | | | | | - | | El Capitan (Lakeside,CA) | |
| 39 | 1171 | June-Reg | Andre Thompson | Of | | | | | | A- | | Delta State University | |
| 40 | 1201 | June-Reg | Curtis Anthony | SS | | | | | | - | | | |
| 42 | 1257 | June-Reg | Wesley Warren | of | 19 | 5-11 | 185 | R | R | - | | Arcadia (Phoenix,AZ) | |
| 43 | 1284 | June-Reg | Jamaon Halbig | of | | | | | | - | | Southwestern Community College | |
| 44 | 1310 | June-Reg | Bart Vaughn | p | | | | | | - | | State College of Florida, Manatee-Sarasota | |
