| 1 | 18 | June-Reg | R.A. Dickey | P | 21 | 6-3 | 205 | R | R | MLB | 2001-2009 | University of Tennessee | $75,000 |
| 1 | 24 | June-Reg | Sam Marsonek | P | 17 | 6-6 | 225 | R | R | MLB | 2004-2004 | Jesuit (Tampa,FL) | $834,000 |
| 1 | 32 | June-Reg | Corey Lee | P | 21 | 6-2 | 180 | B | L | MLB | 1999-1999 | North Carolina State University | $385,000 |
| 2 | 53 | June-Reg | Derrick Cook | P | 20 | 6-2 | 195 | R | R | AA | | James Madison University | |
| 3 | 83 | June-Reg | Derek Baker | 3B | 20 | 6-2 | 220 | L | R | AA | | Santiago Canyon College | |
| 4 | 113 | June-Reg | Kelly Dransfeldt | SS | 21 | 6-2 | 195 | R | R | MLB | 1999-2004 | University of Michigan | |
| 5 | 143 | June-Reg | Warren Morris | 2B | 22 | 5-11 | 179 | L | R | MLB | 1999-2003 | Louisiana State University | |
| 6 | 173 | June-Reg | Tony Fisher | OF | | | | | | A | | University of St. Thomas | |
| 7 | 203 | June-Reg | Juan Piniella | OF | 18 | 5-10 | 160 | R | R | AA | | North Stafford (Stafford,VA) | |
| 8 | 233 | June-Reg | Luis Acevedo | SS | 18 | 5-11 | 180 | R | R | A+ | | Isabella (PR) | |
| 9 | 263** | June-Reg | Randy Rodriguez | P | | | | | | - | | Florida Air Academy (Melbourne,FL) | |
| 10 | 293 | June-Reg | Doug Davis | P | 20 | 6-3 | 190 | R | L | MLB | 1999-2009 | City College of San Francisco | |
| 11 | 323** | June-Reg | Quenten Patterson | P | 18 | 6-3 | 210 | R | R | A | | Killeen (Killeen,TX) | |
| 12 | 353 | June-Reg | Tony Dellamano | p | 21 | 6-5 | 205 | R | R | A+ | | University of California-Davis | |
| 13 | 383 | June-Reg | Justin Siegel | p | 20 | 6-0 | 170 | L | L | A | | Long Beach State University | |
| 14 | 413** | June-Reg | Chris Combs | 1B | 21 | 6-8 | 232 | L | R | A+ | | North Carolina State University | |
| 15 | 443** | June-Reg | Alex Vazquez | OF | 19 | 6-0 | 170 | R | R | A+ | | Westminster (Westminster,CA) | |
| 16 | 473 | June-Reg | Ron Nelson | p | 22 | 6-4 | 195 | R | R | A | | Ohio State University | |
| 17 | 503 | June-Reg | John Kertis | p | 21 | 6-2 | 200 | B | R | A | | | |
| 18 | 533** | June-Reg | Brian Jackson | p | 18 | 6-4 | 190 | R | R | A+ | | San Diego Mesa College | |
| 19 | 563** | June-Reg | Mark Hendrickson | p | 22 | 6-9 | 230 | L | L | MLB | 2002-2009 | Washington State University | |
| 20 | 593 | June-Reg | John Eris | C | | | | | | - | | University of Maine | |
| 21 | 623 | June-Reg | Adrian Myers | OF | 21 | 5-10 | 175 | R | R | AAA | | William Carey University | |
| 22 | 653 | June-Reg | Tony Shourds | p | 19 | 6-3 | 185 | R | R | A | | Norwalk Community College | |
| 23 | 683** | June-Reg | Casey Davis | OF | | | | | | - | | Wichita State University | |
| 24 | 713 | June-Reg | Mike Zywica | OF | 21 | 6-4 | 190 | R | R | AAA | | University of Evansville | |
| 25 | 743 | June-Reg | John Santos | p | | | | | | - | | Cuesta College | |
| 26 | 773** | June-Reg | Joe Beimel | p | 19 | 6-2 | 201 | L | L | MLB | 2001-2009 | Allegheny College | |
| 27 | 803 | June-Reg | Todd Periou | p | 20 | 6-4 | 190 | L | L | - | | Lassen Community College | |
| 28 | 833 | June-Reg | Steve Smella | OF | | | | | | A | | Indiana University | |
| 29 | 863** | June-Reg | Grant Dorn | p | 18 | 6-4 | 210 | R | R | A | | Derry Area (Derry,PA) | |
| 30 | 893 | June-Reg | Aaron Bond | p | 19 | 6-2 | 230 | R | R | A+ | | College of Southern Idaho | |
| 31 | 923 | June-Reg | Travis Hafner | 3B | 19 | 6-3 | 215 | L | R | MLB | 2002-2009 | Cowley College | |
| 32 | 953 | June-Reg | Danny Meier | OF | | | | | | - | | Northeast Texas Community College | |
| 33 | 983 | June-Reg | Ryan Smith | p | 21 | 6-4 | 215 | L | L | A | | San Diego State University | |
| 34 | 1013 | June-Reg | Kevin Smith | p | | | | | | - | | Martin (Arlington,TX) | |
| 35 | 1043 | June-Reg | Ali Cepeda | Of | 19 | 6-1 | 205 | R | R | A+ | | Canada College | |
| 37 | 1103 | June-Reg | Mike Wombacher | p | 18 | 6-5 | 235 | L | L | A | | Mingus (Cottonwood,AZ) | |
| 38 | 1133 | June-Reg | Scott Green | p | | | | | | - | | Navarro College | |
| 39 | 1163 | June-Reg | Craig Petulla | p | 17 | 6-2 | 185 | R | R | Rookie | | Philipsburg-Osceola (Philipsburg,PA) | |
| 40 | 1193 | June-Reg | Jesse Smith | SS-of | | | | | | - | | American River College | |
| 41 | 1222 | June-Reg | Fehlandt Lentini | of | 18 | 6-0 | 185 | R | R | AAA | | Napa Valley College | |
| 42 | 1250 | June-Reg | Kyle Skinner | SS | | | | | | - | | Mount Saint Joseph (Baltimore,MD) | |
| 43 | 1277 | June-Reg | Justin Wise | of | | | | | | - | | Westbrook (Beaumont,TX) | |
| 44 | 1303 | June-Reg | Jose Pimentel | 1B | | | | | | AA | | Indio (Indio,CA) | |
| 45 | 1329 | June-Reg | Frank Jaramillo | SS | 21 | 5-11 | 170 | R | R | A+ | | Southern Illinois University | |
| 46 | 1354 | June-Reg | Rowan Richards | of | 22 | 6-0 | 195 | R | R | AA | | University of Notre Dame | |
| 47 | 1378 | June-Reg | Curtis Young | of | | | | | | - | | Purvis (Purvis,MS) | |
| 48 | 1401** | June-Reg | David Wigley | of | | | | | | - | | Pensacola (Pensacola,FL) | |
| 49 | 1424 | June-Reg | Kevin Colbourn | p | | | | | | - | | Hagerstown Community College | |
| 50 | 1447** | June-Reg | Ron Chiavacci | p | 18 | 6-2 | 220 | R | R | AAA | | Lackawanna College | |
| 51 | 1468 | June-Reg | Greg Horton | of | 19 | 6-0 | 195 | R | R | - | | El Paso Community College | |
| 52 | 1488 | June-Reg | Anthony Perlozzo | 1B | | | | | | - | | Athens Area (Athens,PA) | |