| 1 | 20 | June-Reg | Eric Milton | P | 20 | 6-3 | 220 | L | L | MLB | 1998-2009 | University of Maryland | $775,000 |
| 2 | 59 | June-Reg | Jason Coble | P | 18 | 6-3 | 185 | R | L | A | | Lincoln County (Fayetteville,TN) | |
| 3 | 89 | June-Reg | Nick Johnson | 1B | 17 | 6-3 | 195 | L | L | MLB | 2001-2009 | McClatchy (Sacramento,CA) | |
| 4 | 119 | June-Reg | Vidal Candaleria | C | | | | | | Rookie | | | |
| 5 | 149 | June-Reg | Zach Day | P | 18 | 6-4 | 185 | R | R | MLB | 2002-2006 | La Salle (Cincinnati,OH) | |
| 6 | 179 | June-Reg | Brian Reith | P | 18 | 6-5 | 190 | R | R | MLB | 2001-2004 | Concordia Lutheran (Fort Wayne,IN) | |
| 7 | 209 | June-Reg | Brian Aylor | OF | 22 | 6-2 | 200 | L | L | A+ | | Oklahoma State University | |
| 8 | 239 | June-Reg | Allen Butler | 3B | 21 | 6-3 | 190 | L | R | A+ | | Lincoln Memorial University | |
| 9 | 269 | June-Reg | Chris Fulbright | P | 18 | 6-2 | 221 | R | R | College | | Libertyville (Libertyville,IL) | |
| 10 | 299 | June-Reg | Rudy Gomez | 2B | 21 | 5-11 | 180 | R | R | AAA | | University of Miami | |
| 11 | 329** | June-Reg | Brant Ust | SS | 17 | 6-2 | 200 | R | R | AAA | | Eastlake (Sammamish,WA) | |
| 12 | 359 | June-Reg | Eric Krall | p | 22 | 6-4 | 215 | L | L | A | | Birmingham-Southern College | |
| 13 | 389** | June-Reg | Andy Helmer | p | | | | | | College | | Bishop Dwenger (New Haven,IN) | |
| 14 | 419 | June-Reg | Yoiset Vale | p | | | | | | - | | Monsignor Pace (Miami,FL) | |
| 15 | 449** | June-Reg | Nick Stocks | p | 17 | 6-2 | 190 | R | R | AAA | | Jesuit (Tampa,FL) | |
| 16 | 479 | June-Reg | Justin Rayment | p | 22 | 6-8 | 230 | L | L | - | | San Diego State University | |
| 17 | 509** | June-Reg | Matt Ginter | p | 18 | 6-1 | 220 | R | R | MLB | 2000-2008 | Clark (Winchester,KY) | |
| 18 | 539 | June-Reg | Chuck Hazzard | 1B | | 6-4 | 210 | R | R | College | | University of Florida | |
| 19 | 569 | June-Reg | Brian Gilman | C-SS | 18 | 6-0 | 180 | L | R | - | | Westview (Portland,OR) | |
| 20 | 599 | June-Reg | Brandon Hendrikx | p | 20 | 6-1 | 210 | R | R | A- | | Santiago Canyon College | |
| 21 | 629 | June-Reg | Kyle Brunen | | | | | | | - | | Delisle Composite School (Delisle,SK) | |
| 22 | 659 | June-Reg | Joe Pourron | p | 19 | 6-7 | 222 | R | R | A+ | | Chattahoochee Valley Community College | |
| 23 | 689 | June-Reg | Kevin Overcash | SS | | | | | | College | | | |
| 24 | 719** | June-Reg | Fontella Jones | OF | 21 | 6-2 | 210 | R | R | A+ | | Mississippi Gulf Coast Community College | |
| 25 | 749 | June-Reg | Adam Ramos | OF | | | | | | - | | Lehman (Bronx,NY) | |
| 26 | 779 | June-Reg | Joshua Hawes | p | | | | | | - | | Toll Gate (Warwick,RI) | |
| 27 | 809 | June-Reg | Jason McBride | p | 20 | 6-1 | 175 | R | R | A | | Pensacola Junior College | |
| 28 | 839 | June-Reg | Clay Eavenson | p | 18 | 6-3 | 185 | R | R | A | | | |
| 29 | 869 | June-Reg | Ryan Tack | p | | | | | | - | | Saddleback College | |
| 30 | 899 | June-Reg | Marcus Thames | OF | 19 | 6-2 | 205 | R | R | MLB | 2002-2009 | East Central Community College | |
| 31 | 929 | June-Reg | Ryan Huffman | OF | | | | | | A | | Texas A&M University | |
| 32 | 959 | June-Reg | Ryan Wheeler | 2B | | | | | | A- | | Lincoln Memorial University | |
| 33 | 989 | June-Reg | Blaine Phillips | C | 23 | 6-1 | 200 | R | R | A- | | University of Louisiana at Lafayette | |
| 34 | 1019** | June-Reg | Jared Hoerman | p | 19 | 6-4 | 215 | R | R | AAA | | Eastern Oklahoma State College | |
| 35 | 1049 | June-Reg | Dan Kerrigan | Of | | | | | | - | | Northeast (St. Petersburg,FL) | |
| 36 | 1079 | June-Reg | Noel Manley | C-1B | | | | | | - | | Louisburg College | |
| 37 | 1109 | June-Reg | Justin Carpenter | p | 19 | 6-4 | 215 | R | R | A | | Seminole Community College | |
| 38 | 1139 | June-Reg | Jarvis Larry | Of | | | | | | - | | Parkway (Bossier City,LA) | |
| 39 | 1169 | June-Reg | Eunique Johnson | 3B | | | | | | Ind | | | |
| 40 | 1199 | June-Reg | Dennis Twombley | of | 21 | 6-2 | 218 | R | R | A+ | | Pepperdine University | |
| 41 | 1228 | June-Reg | Gavin Hare | C | | | | | | - | | Eastlake (Sammamish,WA) | |
| 42 | 1256 | June-Reg | Alain Cruz | 3B | | | | | | A+ | | Miami-Dade College | |
| 43 | 1283 | June-Reg | Migues Rodriguez | SS | | | | | | - | | Cypress College | |
| 44 | 1309 | June-Reg | William Pieper | 3B | 18 | 6-2 | 225 | R | R | A- | | Kamehameha (Honolulu,HI) | |
| 45 | 1335** | June-Reg | Mark Hamilton | p | 18 | 6-2 | 210 | L | L | A+ | | Bell (Hurst,TX) | |
| 46 | 1360 | June-Reg | Daryl Grant | 1B-p | | | | | | - | | Florin (Sacramento,CA) | |
| 47 | 1384 | June-Reg | Nate Dighera | of-C | | | | | | Ind | | Southwestern Community College | |
| 48 | 1407 | June-Reg | Samuel Norris | 1B | | | | | | - | | City College of San Francisco | |
| 49 | 1430 | June-Reg | Robert Simpson | C | | | | | | - | | Christian (El Cajon,CA) | |
| 50 | 1453 | June-Reg | Charles Armstrong | p | | | | | | - | | | |
| 51 | 1474 | June-Reg | Cesar Castaneda | 3B | 19 | 6-3 | 210 | R | R | A | | East Los Angeles College | |
| 52 | 1493** | June-Reg | Russ Chambliss | of | 21 | 6-3 | 190 | L | R | A+ | | Washington and Jefferson College | |
| 53 | 1510 | June-Reg | Felix Lopez | 1B | | | | | | - | | Plant (Tampa,FL) | |
| 54 | 1526** | June-Reg | Jason Halper | of | 21 | 5-10 | 175 | B | R | A- | | Columbia University | |
| 55 | 1542 | June-Reg | Derek Bauer | 2B | | | | | | - | | Clarkstown North (New City,NY) | |
| 56 | 1557 | June-Reg | Bob Meier | of | | | | | | Rookie | | Cinnaminson (Cinnaminson,NJ) | |
| 57 | 1568 | June-Reg | Hector Rivera | 3B | | | | | | - | | Jesuit (Tampa,FL) | |
| 58 | 1578 | June-Reg | Trevor Bishop | p | | | | | | Ind | | Lethbridge Community College | |
| 59 | 1588 | June-Reg | Jay Foster | p | | | | | | - | | Birch Hils Composite (Birch Hills,SK) | |
| 60 | 1597 | June-Reg | Nathan Cadena | SS | 16 | 6-3 | 195 | R | R | Rookie | | Cerritos College | |
| 61 | 1605** | June-Reg | Cedrick Harris | of | 18 | 6-2 | 190 | R | R | AA | | Ashdown (Ashdown,AR) | |
| 62 | 1612 | June-Reg | Jason Tisone | p | 21 | 6-2 | 210 | R | R | A- | | Seton Hall University | |
| 63 | 1619** | June-Reg | Tony Gomes | p | 18 | 6-2 | 190 | R | R | AA | | Lodi (Lodi,CA) | |
| 64 | 1624** | June-Reg | Matt Wise | p | 20 | 6-4 | 190 | R | R | MLB | 2000-2008 | Cal State Fullerton | |
| 65 | 1629 | June-Reg | Mitchell Roth | C | | | | | | - | | Cleveland (Reseda,CA) | |
| 66 | 1634** | June-Reg | Fred Smith | of | 18 | 6-2 | 172 | R | R | A- | | Bryan Station (Lexington,KY) | |
| 67 | 1639 | June-Reg | Craig Hann | C | | | | | | - | | Walshe (Fort MacLeod,AB) | |
| 68 | 1644 | June-Reg | Avante Rose | of | | | | | | - | | | |
| 69 | 1649 | June-Reg | Ryan Suyama | SS | | | | | | - | | Sprague (Salem,OR) | |
| 70 | 1654 | June-Reg | Amir Taylor | of | | | | | | - | | Lincoln (San Diego,CA) | |
| 71 | 1659 | June-Reg | Adrian Mora | 2B-SS | | | | | | - | | Southwestern Community College | |
| 72 | 1664 | June-Reg | Aaron Kramer | p | 21 | 6-1 | 210 | B | R | AA | | Grand Canyon University | |
| 73 | 1669 | June-Reg | Harold Frazier | p | 22 | 6-1 | 190 | L | L | A | | Northeastern Oklahoma A&M College | |
| 74 | 1674 | June-Reg | William Duncan | of | | | | | | - | | Big Bend Community College | |
| 75 | 1679 | June-Reg | Mike Bieble | p | | | | | | - | | Ohio State University | |
| 76 | 1683 | June-Reg | Adam Danner | p | 21 | 6-3 | 210 | R | R | A+ | | University of South Florida | |
| 77 | 1687 | June-Reg | Rhett Ingerick | p | 21 | 6-6 | 195 | R | R | A- | | Davidson College | |
| 78 | 1691 | June-Reg | Bryan Green | 1B | | | | | | - | | Jasper (Jasper,TX) | |
| 79 | 1695 | June-Reg | Richard Bottomley | C | | | | | | - | | Ramona (Riverside,CA) | |
| 80 | 1698** | June-Reg | Garry Templeton | SS | 17 | 5-9 | 170 | R | R | A- | | Poway (Poway,CA) | |
| 81 | 1701** | June-Reg | Nicholas Herz | C | | | | | | Ind | | Poway (Poway,CA) | |
| 82 | 1704 | June-Reg | Corey Ward | of | 17 | 6-2 | 195 | R | R | Rookie | | Skyline (Dallas,TX) | |
| 83 | 1706 | June-Reg | Gustavo Alonso | C | 17 | 6-2 | 200 | R | R | - | | David Starr Jordan (Long Beach,CA) | |
| 84 | 1708 | June-Reg | Chris Small | C | 18 | 6-0 | 210 | R | R | A- | | Punahou (Honolulu,HI) | |
| 85 | 1710 | June-Reg | Matt Martinez | SS | | | | | | - | | Big Bend Community College | |
| 86 | 1712 | June-Reg | Adam Wilson | SS | | | | | | - | | Mission Bay (San Diego,CA) | |
| 87 | 1714 | June-Reg | Nathan Kaup | 3B | 18 | 6-3 | 215 | R | R | AA | | | |
| 88 | 1716 | June-Reg | Scott Seabol | 3B | 21 | 6-4 | 200 | R | R | MLB | 2001-2005 | West Virginia University | |
| 89 | 1718 | June-Reg | Damion Malott | of | | | | | | - | | Cosumnes River College | |
| 90 | 1720** | June-Reg | Brad Gorrie | SS | 21 | 5-9 | 180 | R | R | A- | | University of Massachusetts | |
| 91 | 1722 | June-Reg | Michael Myers | of | | | | | | - | | Allegheny College | |
| 92 | 1724 | June-Reg | Ben Hickman | p | 19 | 6-0 | 240 | R | R | A | | Northeast Texas Community College | |
| 93 | 1726 | June-Reg | Errol Smith | of | | | | | | - | | St. Augustine (San Diego,CA) | |
| 94 | 1728 | June-Reg | Clay Condrey | p | 20 | 6-3 | 195 | R | R | MLB | 2002-2009 | Angelina College | |
| 95 | 1730 | June-Reg | Greg Donohue | C | | | | | | - | | Rockland Community College | |
| 96 | 1732 | June-Reg | Jose Garcia | p | 18 | 6-3 | 195 | R | R | AAA | | Southwestern Community College | |
| 97 | 1734 | June-Reg | Mark Copeland | p | | | | | | - | | Muscatine Community College | |
| 98 | 1736 | June-Reg | Todd Trunk | p | 22 | 6-4 | 190 | R | R | A- | | North Central College | |
| 99 | 1737** | June-Reg | Mike Amrhein | 3B | 21 | 6-2 | 215 | R | R | AAA | | University of Notre Dame | |
| 100 | 1738 | June-Reg | Aron Amundson | 3B | 19 | 6-3 | 225 | L | R | Ind | | Eastern Oklahoma State College | |