| 1 | 23** | June-Reg | David Miller | 1B | 21 | 6-3 | 180 | L | L | AAA | | Clemson University | $620,000 |
| 2 | 53 | June-Reg | Sean Casey | 1B | 20 | 6-4 | 226 | L | R | MLB | 1997-2008 | University of Richmond | $223,000 |
| 3 | 82 | June-Reg | Chad Whitaker | OF | 18 | 6-2 | 190 | L | R | AA | | St. Thomas Aquinas (Fort Lauderdale,FL) | |
| 4 | 110** | June-Reg | Scott Harrison | P | | | | | | - | | John Swett (Crockett,CA) | |
| 5 | 138 | June-Reg | Scott Schultz | P | | 5-10 | 185 | R | R | A- | | Louisiana State University | |
| 6 | 166 | June-Reg | Jake Messner | OF | 18 | 6-1 | 205 | L | L | AA | | Rio Americano (Sacramento,CA) | |
| 7 | 194 | June-Reg | Scott Morgan | OF | 21 | 6-7 | 230 | R | R | AAA | | Gonzaga University | |
| 8 | 222 | June-Reg | Tim Jorgensen | SS | 22 | 6-3 | 200 | L | R | AA | | University of Wisconsin-Oshkosh | |
| 9 | 250 | June-Reg | Mike Edwards | SS | 18 | 6-1 | 185 | R | R | MLB | 2003-2006 | Mechanicsburg Area (Mechanicsburg Area,PA) | |
| 10 | 278 | June-Reg | Jason Bennett | P | 20 | 6-0 | 200 | R | R | A | | Shippensburg University of Pennsylvania | |
| 11 | 306 | June-Reg | Jewell Williams | OF | 18 | 6-2 | 185 | R | R | A | | Las Vegas (Las Vegas,NV) | |
| 12 | 334 | June-Reg | Brett Merrick | p | 21 | 6-0 | 180 | L | L | AA | | University of Washington | |
| 13 | 362 | June-Reg | Frankie Sanders | p | 19 | 5-11 | 165 | R | R | AAA | | Pasco-Hernando Community College | |
| 14 | 390 | June-Reg | Scott Winchester | p | 22 | 6-2 | 210 | R | R | MLB | 1997-2001 | Clemson University | |
| 15 | 418 | June-Reg | Darren Loudermilk | p | 20 | 6-3 | 220 | R | R | A | | Oklahoma City University | |
| 16 | 446** | June-Reg | Luis Estrella | p | 20 | 6-1 | 220 | R | R | AAA | | Santiago Canyon College | |
| 17 | 474 | June-Reg | Terry Harvey | p | 22 | 6-1 | 180 | R | R | A+ | | North Carolina State University | |
| 18 | 502 | June-Reg | Keith Horn | p | 21 | 5-11 | 185 | R | R | A+ | | Arkansas State University | |
| 19 | 530 | June-Reg | Jason Minici | OF | | | | | | A | | Long Beach State University | |
| 20 | 558 | June-Reg | Marc Deschenes | SS | 22 | 6-0 | 200 | R | R | AAA | | University of Massachusetts-Lowell | |
| 21 | 586 | June-Reg | Mark Budzinski | OF | 21 | 6-2 | 175 | L | L | MLB | 2003-2003 | University of Richmond | |
| 22 | 614 | June-Reg | Michael Glavine | 1B | 22 | 6-3 | 210 | L | L | MLB | 2003-2003 | Northeastern University | |
| 23 | 642 | June-Reg | Jon Edwards | p | 22 | 6-0 | 175 | R | R | A+ | | Whitman College | |
| 24 | 670 | June-Reg | Ken Wagner | p | 20 | 6-4 | 218 | R | R | A+ | | Florida Atlantic University | |
| 25 | 698** | June-Reg | Jason Rakers | p | 22 | 6-2 | 200 | R | R | MLB | 1998-2000 | New Mexico State University | |
| 26 | 726 | June-Reg | Frank Chapman | p | | | | | | - | | San Jacinto College | |
| 27 | 754 | June-Reg | Gary Rodriguez | OF | 18 | 5-11 | 165 | L | R | A+ | | Seminole Community College | |
| 28 | 782 | June-Reg | Michael Bishop | OF-C | | | | | | - | | Willis (Willis,TX) | |
| 29 | 810** | June-Reg | Corey Richardson | OF | 18 | 6-0 | 165 | B | R | AA | | Daingerfield (Daingerfield,TX) | |
| 30 | 838 | June-Reg | Jason Adge | p | 23 | 6-0 | 195 | L | R | A | | University of Miami | |
| 31 | 866 | June-Reg | Ricky Gonzalez | C | 20 | 6-0 | 185 | R | R | AA | | University of Miami | |
| 32 | 894 | June-Reg | Michael Custer | p | | | | | | - | | Linn-Benton Community College | |
| 33 | 922 | June-Reg | Nathan Coats | Of | | | | | | A- | | City College of San Francisco | |
| 34 | 950** | June-Reg | Jamie Brown | p | 18 | 6-2 | 205 | R | R | MLB | 2004-2004 | West Lauderdale (Collinsville,MS) | |
| 35 | 978 | June-Reg | Bryan Hardy | 1B | | | | | | Rookie | | Martin (Arlington,TX) | |
| 36 | 1006 | June-Reg | Jerry Taylor | Of | | | | | | A+ | | University of Texas | |
| 37 | 1034 | June-Reg | Chad Thornhill | SS | 22 | 6-3 | 180 | B | R | A | | Cal State Northridge | |
| 38 | 1062 | June-Reg | Ross Atkins | p | 21 | 6-2 | 195 | R | R | AA | | Wake Forest University | |
| 39 | 1090 | June-Reg | Thomas Blythe | C | | | | | | - | | North Little Rock (North Little Rock,AR) | |
| 40 | 1118** | June-Reg | Randy Keisler | p | 19 | 6-3 | 190 | L | L | MLB | 2000-2007 | Navarro College | |
| 41 | 1146 | June-Reg | Mike Spiegel | p | 19 | 6-5 | 200 | L | L | AAA | | Sacramento City College | |
| 42 | 1174 | June-Reg | Dennis Martinez | p | 21 | 6-3 | 170 | B | R | A | | Saint Thomas University | |
| 43 | 1202** | June-Reg | Cody Ransom | SS | 19 | 6-2 | 190 | R | R | MLB | 2001-2009 | South Mountain Community College | |
| 44 | 1230 | June-Reg | Alberto Garza | p | 18 | 6-3 | 195 | R | R | AA | | Wapato (Wapato,WA) | |
| 45 | 1256** | June-Reg | Kirk Irvine | p | 20 | 6-0 | 185 | R | R | A | | Santiago Canyon College | |
| 46 | 1280 | June-Reg | Rex Crosnoe | C | | | | | | - | | Southeast Missouri State University | |
| 47 | 1304 | June-Reg | Samuel Mathis | p | 22 | 6-1 | 195 | R | R | A | | Southern Arkansas University | |
| 48 | 1326 | June-Reg | Ryan Bailey | p | | | | | | - | | Rancho Bernardo (San Diego,CA) | |
| 49 | 1348 | June-Reg | Brian Anderson | p | 23 | 6-1 | 183 | R | L | MLB | 1993-2005 | East Tennessee State University | |
| 50 | 1369 | June-Reg | Peter Lopez | p | | | | | | - | | Manchester Central (Manchester,NH) | |
| 51 | 1388 | June-Reg | Tony Fleetwood | p | 23 | 6-3 | 200 | L | L | A- | | Oklahoma State University | |
| 52 | 1408 | June-Reg | Michael Ploharz | p | | | | | | - | | Clovis (Clovis,CA) | |
| 53 | 1427** | June-Reg | Kevin Eberwein | p | 18 | 6-4 | 200 | R | R | AAA | - | Green Valley (Henderson,NV) | |
| 54 | 1445 | June-Reg | Damien Kolb | of | | | | | | - | | | |
| 55 | 1463 | June-Reg | Brandon Driggers | p | 18 | 6-0 | 180 | | R | - | | Whitehouse (Whitehouse,TX) | |