| 1 | 25 | June-Reg | Jeff Liefer | 3B | 20 | 6-3 | 195 | L | R | MLB | 1999-2005 | Long Beach State University | $550,000 |
| 2 | 55 | June-Reg | Brian Simmons | OF | 21 | 6-2 | 190 | B | R | MLB | 1998-2001 | University of Michigan | $210,000 |
| 3 | 84** | June-Reg | J.J. Putz | P | 18 | 6-5 | 220 | R | R | MLB | 2003-2009 | Trenton (Trenton,MI) | |
| 4 | 112 | June-Reg | Ryan Topham | OF | 21 | 6-3 | 200 | L | L | AA | | University of Notre Dame | |
| 5 | 140 | June-Reg | Tighe Brown | P | 18 | 6-4 | 195 | R | R | AA | | St. Xavier (Louisville,KY) | |
| 6 | 168 | June-Reg | Jon Hunt | P | 21 | 6-1 | 190 | L | L | A+ | | Ohio University | |
| 7 | 196 | June-Reg | Jason Lakman | P | 18 | 6-5 | 230 | R | R | AAA | | Woodinville (Woodinville,WA) | |
| 8 | 224 | June-Reg | Adam Virchis | P | 21 | 6-3 | 185 | R | R | AAA | | San Diego State University | |
| 9 | 252 | June-Reg | Jason Secoda | P | 20 | 6-1 | 200 | R | R | AAA | | Cal State Los Angeles | |
| 10 | 280 | June-Reg | Chuck Klee | SS | 18 | 6-3 | 175 | R | R | A+ | | Cardinal Gibbons (Fort Lauderdale,FL) | |
| 11 | 308 | June-Reg | Kevin Beirne | P | 21 | 6-4 | 210 | L | R | MLB | 2000-2002 | Texas A&M University | |
| 12 | 336 | June-Reg | Daron Hollins | OF | 20 | 6-0 | 200 | R | R | A | | Sierra College | |
| 13 | 364 | June-Reg | Brian Downs | C | 20 | 6-2 | 210 | R | R | AAA | | Riverside Community College | |
| 14 | 392 | June-Reg | Tom Buckman | p | 21 | 6-6 | 200 | R | R | A | | Edison State College | |
| 15 | 420** | June-Reg | Eric Stanton | 1B | 17 | 6-3 | 215 | R | R | Rookie | | Newberry (Newberry,SC) | |
| 16 | 448 | June-Reg | Erik Desrosiers | p | 20 | 6-4 | 210 | R | R | A+ | | Grand Canyon University | |
| 17 | 476 | June-Reg | Derek Hasselhoff | p | 21 | 6-2 | 202 | R | R | AAA | | Towson University | |
| 18 | 504 | June-Reg | Mike Vota | p | 22 | 6-4 | 175 | R | R | A | | Towson University | |
| 19 | 532 | June-Reg | Jeff Johnson | SS | 22 | 5-10 | 175 | R | R | A | | University of Mississippi | |
| 20 | 560 | June-Reg | Chris Beck | OF | 18 | 6-2 | 210 | R | R | - | | El Dorado (Placentia,CA) | |
| 21 | 588 | June-Reg | Barry Shelton | 3B | 21 | 5-11 | 210 | R | R | A | | West Virginia State University | |
| 22 | 616 | June-Reg | Jason Gray | p | 18 | 6-2 | 185 | R | R | A | | Coconut Creek (Coconut Creek,FL) | |
| 23 | 644 | June-Reg | Franklin Anderson | OF | 19 | 6-1 | 200 | R | R | A+ | | Southern Union State Community College | |
| 24 | 672 | June-Reg | Tim Kraus | p | 22 | 6-1 | 190 | L | R | A | | University of Notre Dame | |
| 25 | 700 | June-Reg | John Strasser | SS | 20 | 5-10 | 165 | R | R | A+ | | Mesa Community College | |
| 26 | 728 | June-Reg | Josh Fauske | OF | 21 | 6-4 | 220 | R | R | A | | Central Washington University | |
| 27 | 756** | June-Reg | Aaron Gentry | SS | 20 | 6-2 | 185 | R | R | A+ | | Labette Community College | |
| 28 | 784 | June-Reg | Brent Wilhelm | 3B | 22 | 6-0 | 185 | R | R | A+ | | University of Kansas | |
| 29 | 812 | June-Reg | Kelly Kruse | p | 23 | 6-3 | 210 | R | R | A | | Missouri State University | |
| 30 | 840 | June-Reg | Allen Halley | p | 23 | 6-1 | 195 | B | R | A+ | | University of South Alabama | |
| 31 | 868 | June-Reg | Brian Bullock | p | 18 | 6-1 | 205 | R | R | Rookie | | Itawamba Community College | |
| 32 | 896 | June-Reg | Joel Garber | p | 21 | 6-4 | 205 | L | L | A | | UNLV | |
| 33 | 924** | June-Reg | Chris Weekly | SS | 18 | 6-2 | 195 | L | R | AAA | | Highland (Gilbert,AZ) | |
| 34 | 952** | June-Reg | Eric LeBlanc | p | 21 | 6-0 | 195 | L | R | AAA | | College of Saint Rose | |
| 35 | 980** | June-Reg | Nate Robertson | p | 17 | 6-2 | 215 | L | R | MLB | 2002-2009 | Maize (Maize,KS) | |
| 36 | 1008 | June-Reg | Aaron Randle | 2B-SS | | | | | | - | | Northeast (Oakland Park,FL) | |
| 37 | 1036 | June-Reg | Darren Hayes | Of | 22 | 6-1 | 195 | R | R | A+ | | Wingate University | |
| 38 | 1064** | June-Reg | Steve Sparks | p | 20 | 6-4 | 210 | R | R | MLB | 2000-2000 | Faulkner State Community College | |
| 39 | 1092 | June-Reg | Andrew Tellez | Of | 19 | 5-10 | 200 | L | L | - | | Fullerton College | |
| 40 | 1120** | June-Reg | Matt Howe | SS | 18 | 6-0 | 190 | R | R | AA | | Mayde Creek (Houston,TX) | |
| 41 | 1148 | June-Reg | Kereon Clarke | of-2B | | | | | | - | | South Plantation (Plantation,FL) | |
| 42 | 1176 | June-Reg | Pete Demorejon | p | 20 | 6-1 | 180 | R | R | A | | University of Miami | |
| 43 | 1204** | June-Reg | Justin Rayment | p | 21 | 6-8 | 230 | L | L | - | | San Diego State University | |
| 44 | 1232 | June-Reg | David Harden | p | | | | | | - | | Allen County Community College | |
| 45 | 1257 | June-Reg | Jason Fennell | of | 17 | 6-3 | 210 | B | R | A+ | | Baldwin (Pittsburgh,PA) | |
| 46 | 1281 | June-Reg | Nestor Gonzales | C | | | | | | - | | Rio Grande (Albuquerque,NM) | |
| 47 | 1305 | June-Reg | David Hostetter | of | | | | | | - | | Fannett Metal (Fort Loudan,PA) | |
| 48 | 1327 | June-Reg | Brian Thrash | of | | | | | | - | | Rising Sun (North East,MD) | |
| 49 | 1349 | June-Reg | Kris Conrad | p | | | | | | - | | Killian (Miami,FL) | |
| 50 | 1370 | June-Reg | Wade Sterling | C | | | | | | - | | Allen County Community College | |
| 51 | 1389 | June-Reg | Brian Bowness | 1B-3b | 21 | 6-3 | 205 | R | R | A | | Villanova University | |
| 52 | 1409 | June-Reg | Peter Rodriguez | of | | | | | | - | | Broward College | |
| 53 | 1428 | June-Reg | Manny Lutz | 3B | 19 | 6-2 | 230 | L | R | AA | | Southwestern Community College | |
| 54 | 1446 | June-Reg | Mike Biasucci | 2B | | | | | | - | | South Broward (Hollywood,FL) | |