| 1 | 4 | June-Reg | Kerry Wood | P | 18 | 6-5 | 230 | R | R | MLB | 1998-2009 | Grand Prairie (Grand Prairie,TX) | $1,265,000 |
| 2 | 34 | June-Reg | Brian McNichol | P | 21 | 6-5 | 225 | L | L | MLB | 1999-1999 | James Madison University | $305,000 |
| 3 | 63 | June-Reg | Jeff Yoder | P | 19 | 6-2 | 210 | L | R | AA | | Pottsville Area (Pottsville,PA) | |
| 4 | 91** | June-Reg | Adam Everett | SS | 18 | 6-0 | 156 | R | R | MLB | 2001-2009 | Harrison (Kennesaw,GA) | |
| 5 | 119 | June-Reg | Ismael Villegas | P | 18 | 6-0 | 188 | R | R | MLB | 2000-2000 | | |
| 6 | 147 | June-Reg | Tony Ellison | OF | 20 | 6-0 | 195 | R | R | A | | North Carolina State University | |
| 7 | 175 | June-Reg | Dorian Speed | OF | 21 | 6-3 | 205 | R | R | AA | | Florida International University | |
| 8 | 203 | June-Reg | Denny Bair | P | 20 | 6-5 | 210 | L | R | A+ | | University of Louisiana-Monroe | |
| 9 | 231 | June-Reg | Chad Ricketts | P | 20 | 6-5 | 225 | R | R | AAA | | Polk State College | |
| 10 | 259 | June-Reg | Kasey Pressley | 1B | 18 | 6-4 | 220 | L | R | A- | | Dr. Phillips (Orlando,FL) | |
| 11 | 287 | June-Reg | Matt Hammons | P | 18 | 6-3 | 205 | R | R | AAA | | Mission Bay (San Diego,CA) | |
| 12 | 315 | June-Reg | Barry Markey | p | 19 | 6-5 | 240 | R | R | A+ | | St. Petersburg (St. Petersburg,FL) | |
| 13 | 343 | June-Reg | Terry Joseph | OF | 21 | 5-10 | 190 | R | R | AA | | New Mexico State University | |
| 14 | 371 | June-Reg | Don Kinnie | OF | 21 | 6-2 | 185 | R | R | A | | University of West Alabama | |
| 15 | 399 | June-Reg | Kris Stading | p | 18 | 6-7 | 235 | L | L | Rookie | | Browne (Phoenix,AZ) | |
| 16 | 427 | June-Reg | Brian Conley | SS-2B | 20 | 510 | 175 | R | R | A | | Volunteer State Community College | |
| 17 | 455 | June-Reg | Chris Moller | 1B | | | | | | - | | University of Alabama | |
| 18 | 483 | June-Reg | Jerry Connell | OF | 17 | 6-2 | 200 | R | R | A+ | | Colonia (Colonia,NJ) | |
| 19 | 511 | June-Reg | Buck Gordon | C | 20 | 6-1 | 220 | R | R | A- | | Bridgewater College | |
| 20 | 539 | June-Reg | Chris Booker | p | 18 | 6-7 | 230 | R | R | MLB | 2005-2007 | Monroe County (Monroeville,AL) | |
| 21 | 567 | June-Reg | Brandon Hammack | p | 22 | 6-5 | 240 | R | R | AA | | University of Texas-San Antonio | |
| 22 | 595 | June-Reg | Andrew Mallory | p | 18 | 6-2 | 160 | R | R | A | | Dixie Hollins (St. Petersburg,FL) | |
| 23 | 623 | June-Reg | Jim Putko | 1B | | | | | | A- | | University of Akron | |
| 24 | 651 | June-Reg | Kevin Bentley | OF | 22 | 6-2 | 210 | R | R | A+ | | University of Southern Mississippi | |
| 25 | 679** | June-Reg | Dax Norris | C | 22 | 5-10 | 190 | R | R | AAA | | University of Alabama | |
| 26 | 707 | June-Reg | Brian Greene | p | 21 | 6-2 | 200 | R | R | A+ | | Indiana University | |
| 27 | 735 | June-Reg | Tim Mosley | p | 20 | 6-0 | 180 | R | R | A+ | | University of Arkansas | |
| 28 | 763 | June-Reg | Scott Vieira | C | 21 | 5-11 | 185 | R | R | AAA | | University of Tennessee | |
| 29 | 791 | June-Reg | Ashanti McDonald | SS-OF | 22 | 6-0 | 185 | L | R | A | | Olivet Nazarene University | |
| 30 | 819 | June-Reg | John McNeese | p | 23 | 6-0 | 180 | R | L | A+ | | University of Mississippi | |
| 31 | 847 | June-Reg | Ron Licciardi | p | 19 | 6-2 | 190 | L | L | A+ | | University of Connecticut-Avery Point | |
| 32 | 875 | June-Reg | Tom Maleski | 3B-C | 17 | 6-0 | 200 | R | R | A | | University of Houston | |
| 33 | 903 | June-Reg | Jason Martino | p | 18 | 6-2 | 180 | R | R | - | | Voorhees (Glen Gardner,NJ) | |
| 34 | 931 | June-Reg | Ryan Seidel | Of | 22 | 6-0 | 180 | R | R | A+ | | Vanguard University of Southern California | |
| 35 | 959 | June-Reg | Chris Humpert | Of | | | | | | - | | Arcadia (Arcadia,CA) | |
| 36 | 987 | June-Reg | Robert Kern | Of | | | | | | - | | Central (Cape Girardeau,MO) | |
| 37 | 1015** | June-Reg | Mark Taylor | p | 20 | 6-3 | 185 | L | L | A | | Rice University | |
| 38 | 1043 | June-Reg | Casey Burns | p | 17 | 6-1 | 185 | R | R | A | | Hopewell Valley Central (Pennington,NJ) | |
| 39 | 1071** | June-Reg | Greg Strickland | Of | 19 | 5-10 | 170 | L | L | A | | Volunteer State Community College | |
| 40 | 1099 | June-Reg | Brandon Ward | p | 19 | 6-5 | 170 | R | R | A | | Cerro Coso Community College | |
| 41 | 1127 | June-Reg | Dan Mooney | of | 18 | 6-1 | 200 | R | R | AA | | Monsignor Donovan (Toms River,NJ) | |
| 42 | 1155 | June-Reg | Michael Smosna | p | | | | | | - | | Burroughs (Ridgecrest,CA) | |
| 43 | 1183 | June-Reg | Dave Phillips | 2B | | | | | | - | | Gloucester County College | |
| 44 | 1211 | June-Reg | David Kelly | p | | | | | | - | | Leon (Tallahassee,FL) | |
| 45 | 1239** | June-Reg | Tim Currens | of | 19 | 6-4 | 195 | L | R | A+ | | Volunteer State Community College | |
| 46 | 1264 | June-Reg | Lance Haver | C | 18 | 6-1 | 220 | R | R | Rookie | | Moralla (Moralla,OR) | |
| 47 | 1288 | June-Reg | Mickey Perez | 2B | | | | | | A+ | | University of Texas-San Antonio | |
| 48 | 1311 | June-Reg | Brett Cornwell | p | | | | | | - | | Hobbs (Hobbs,NM) | |
| 49 | 1333 | June-Reg | Jerry Zaffis | p | | | | | | Ind | | Eustis (Eustis,FL) | |
| 50 | 1355 | June-Reg | Aaron Anthony | 3B | | | | | | - | | Middle Georgia College | |
| 51 | 1376 | June-Reg | Chris Grubbs | C | 19 | 6-3 | 195 | R | R | A | | West Orange (Winter Garden,FL) | |
| 52 | 1395** | June-Reg | Jack Koch | p | 18 | 6-3 | 220 | R | R | A- | | Miami-Dade College | |
| 53 | 1414 | June-Reg | John Ogden | C | | | | | | - | | Palm Beach Community College | |
| 54 | 1433 | June-Reg | Arturo Mats | SS-2B | | | | | | - | | New Mexico Junior College | |
| 55 | 1451 | June-Reg | Justin Speier | C | 21 | 6-4 | 205 | R | R | MLB | 1998-2009 | Nicholls State University | |
| 56 | 1468 | June-Reg | Scott Stephens | p | | | | | | - | | State College of Florida, Manatee-Sarasota | |
| 57 | 1483 | June-Reg | Steven Bechard | p | | | | | | - | | Oneida (Oneida,NY) | |
| 58 | 1497 | June-Reg | Seth Spiken | C | | | | | | - | | Blinn College | |
| 59 | 1511 | June-Reg | Bobby Sprague | of | | | | | | - | | Queen Of Peace (North Arlington,NJ) | |
| 60 | 1524 | June-Reg | Ryan Fuller | p | | | | | | Ind | | Monroe Community College | |
| 61 | 1534 | June-Reg | Kris Williams | p | 18 | 6-0 | 195 | R | R | A- | | Westfield (Westfield,NJ) | |