| 1 | 10 | June-Reg | Chad Hermansen | SS | 17 | 6-2 | 185 | R | R | MLB | 1999-2004 | Green Valley (Henderson,NV) | $1,150,000 |
| 2 | 40 | June-Reg | Garrett Long | 1B | 18 | 6-3 | 207 | R | R | AA | | Bellaire (Bellaire,TX) | $400,000 |
| 3 | 69 | June-Reg | Bronson Arroyo | P | 18 | 6-5 | 180 | R | R | MLB | 2000-2009 | Hernando (Brooksville,FL) | |
| 4 | 97 | June-Reg | Alex Hernandez | OF | 18 | 6-4 | 190 | L | L | MLB | 2000-2001 | | |
| 5 | 125 | June-Reg | Dawan Elliott | OF | 18 | 6-3 | 200 | L | L | A | | Long Branch (Long Branch,NJ) | |
| 6 | 153 | June-Reg | O.J. Cook | P | 18 | 6-3 | 195 | R | R | AA | | Liberty (Bethlehem,PA) | |
| 7 | 181** | June-Reg | Josh Loggins | C | 18 | 6-1 | 190 | R | R | AA | | Harrison (West Lafayette,IN) | |
| 8 | 209** | June-Reg | Brad Weber | OF | | | | | | Rookie | | Dekalb (Waterloo,IN) | |
| 9 | 237 | June-Reg | Fred May | OF | 19 | 6-0 | 205 | L | L | A+ | | John F. Kennedy Memorial (Burien,WA) | |
| 10 | 265 | June-Reg | Daniel Delgado | SS | 18 | 5-9 | 165 | R | R | Ind | | Killian (Miami,FL) | |
| 11 | 293 | June-Reg | Brian O'Connor | P | 18 | 6-2 | 175 | L | L | MLB | 2000-2000 | Redding (Redding,OH) | |
| 12 | 321 | June-Reg | Al Benjamin | OF | 17 | 6-1 | 200 | R | R | AAA | | Milby (Houston,TX) | |
| 13 | 349 | June-Reg | Brian Settle | p | 17 | 6-5 | 190 | R | R | Rookie | | Woodrow Wilson (Portsmouth,VA) | |
| 14 | 377 | June-Reg | Travis Gaerte | p | 18 | 6-3 | 180 | R | R | Rookie | | Fremont (Fremont,IN) | |
| 15 | 405 | June-Reg | Elton Pollock | OF | | | | | | A | | Presbyterian College | |
| 16 | 433** | June-Reg | Ian Rauls | OF | 17 | 6-2 | 170 | L | L | A- | | Ewing (Trenton,NJ) | |
| 17 | 461** | June-Reg | Jason Saenz | p | 18 | 6-2 | 190 | R | L | AAA | | Mater Dei (Santa Ana,CA) | |
| 18 | 489 | June-Reg | Ryan Gillispie | p | 18 | 6-6 | 200 | R | R | Rookie | | Rancho Bernardo (San Diego,CA) | |
| 19 | 517 | June-Reg | Maika Symmonds | p | 22 | 5-9 | 180 | L | L | A+ | | Old Dominion University | |
| 20 | 545 | June-Reg | Derek Bullock | p | 22 | 6-2 | 186 | R | R | A+ | | Briarcliffe College | |
| 21 | 573 | June-Reg | Steven Flanigan | C | | | | | | A | | California University of Pennsylvania | |
| 22 | 601 | June-Reg | Chris Miyake | SS | 21 | 6-2 | 188 | R | R | AA | | University of California-San Diego | |
| 23 | 629 | June-Reg | Cory Bigler | p | | | | | | A- | | University of Wisconsin-Milwaukee | |
| 24 | 657 | June-Reg | Tim Collie | p | 21 | 5-11 | 185 | R | R | A+ | | University of North Carolina-Charlotte | |
| 25 | 685 | June-Reg | John Canetto | 3B | | | | | | A+ | | Coastal Carolina University | |
| 26 | 713 | June-Reg | Chris Heck | p | 18 | 6-4 | 215 | L | L | Rookie | | Northeast (Philadelphia,PA) | |
| 27 | 741 | June-Reg | Jason Farrow | p | 21 | 6-2 | 195 | R | R | A | | University of Houston | |
| 28 | 769 | June-Reg | George Hlodan | p | 19 | 6-1 | 170 | R | R | A | | Forward (Elizabeth,PA) | |
| 29 | 797 | June-Reg | Neal McDade | p | 19 | 6-2 | 186 | R | R | AAA | | Florida Community College | |
| 30 | 825 | June-Reg | Bo Hundt | 3B | 20 | 6-0 | 202 | B | R | A+ | | John A. Logan College | |
| 31 | 853 | June-Reg | Chris Miller | p-3B | | | | | | - | | Winter Haven (Winter Haven,FL) | |
| 32 | 881 | June-Reg | Ronald Brooks | p | | | | | | - | | Leon (Tallahassee,FL) | |
| 33 | 909 | June-Reg | Travis Siegel | Of | | | | | | - | | Choctaw (Choctaw,OK) | |
| 34 | 937 | June-Reg | Jacob Whitfield | p | 19 | 6-2 | 200 | L | L | Rookie | | Tallahassee Community College | |
| 35 | 965 | June-Reg | Matt Hoffman | p | | | | | | - | | Claremore (Claremore,OK) | |
| 36 | 993 | June-Reg | Ron Ricks | p | 20 | 6-5 | 225 | R | R | A | | Tallahassee Community College | |
| 37 | 1021** | June-Reg | Michael Carney | p | | | | | | - | | Merritt Island (Merritt Island,FL) | |
| 38 | 1049** | June-Reg | Brandon Larson | SS | 19 | 6-0 | 210 | R | R | MLB | 2001-2004 | Blinn College | |
| 39 | 1077 | June-Reg | Joseph Wroble | p | | | | | | - | | South Suburban College | |
| 40 | 1105 | June-Reg | Arthur Young | of | | | | | | - | | New Rochelle (New Rochelle,NY) | |
| 41 | 1133 | June-Reg | Jason Wright | p | 19 | 6-4 | 230 | R | R | Ind | | Palomar College | |
| 42 | 1161 | June-Reg | Scott Beach | p | 21 | 6-4 | 175 | R | R | A- | | Pittsburg State University | |
| 43 | 1189 | June-Reg | Rob Thomas | p | | | | | | A- | | Texas A&M University | |
| 44 | 1217 | June-Reg | Jason Shelley | SS | 18 | 6-2 | 190 | R | R | AA | | Plainfield (Plainfield,IL) | |
