| 1 | 5 | June-Reg | Ariel Prieto | P | 25 | 6-2 | 247 | R | R | MLB | 1995-2001 | | $1,200,000 |
| 2 | 35 | June-Reg | Mark Bellhorn | SS | 20 | 6-1 | 214 | B | R | MLB | 1997-2007 | Auburn University | $280,000 |
| 3 | 64** | June-Reg | Billy Brown | OF | 19 | 6-0 | 190 | R | R | A+ | | St. Thomas Aquinas (Fort Lauderdale,FL) | |
| 4 | 92 | June-Reg | Wayne Nix | P | 18 | 6-5 | 210 | R | R | AA | | Monroe (North Hills,CA) | |
| 5 | 120 | June-Reg | Danny Ardoin | OF | 20 | 6-0 | 205 | R | R | MLB | 2000-2008 | McNeese State University | |
| 6 | 148 | June-Reg | Jamey Price | P | 23 | 6-7 | 220 | L | R | AAA | | University of Mississippi | |
| 7 | 176 | June-Reg | Tim Jones | OF | 17 | 6-0 | 208 | L | R | A+ | | Buena Park (Buena Park,CA) | |
| 8 | 204 | June-Reg | Tom Bennett | P | 19 | 6-4 | 180 | R | R | AA | | Ohlone (Ohlone,CA) | |
| 9 | 232 | June-Reg | Tom Knickerbocker | OF | 19 | 6-4 | 230 | L | L | A- | | Kirkwood Community College | |
| 10 | 260 | June-Reg | Ryan Christenson | OF | 21 | 6-0 | 191 | R | R | MLB | 1998-2003 | Pepperdine University | |
| 11 | 288 | June-Reg | Scott Rivette | P | 21 | 6-2 | 200 | B | R | AAA | | Long Beach State University | |
| 12 | 316 | June-Reg | Troy Rauer | OF | 22 | 6-4 | 225 | R | R | A+ | | Arizona State University | |
| 13 | 344 | June-Reg | Willie Hilton | p | 22 | 6-2 | 190 | R | R | A- | | Eastern Illinois University | |
| 14 | 372 | June-Reg | Kevin Miodik | p | 20 | 6-1 | 205 | R | R | A+ | | University of Wisconsin-Oshkosh | |
| 15 | 400** | June-Reg | David Shepard | p | 21 | 6-1 | 195 | R | R | AAA | | Mansfield University of Pennsylvania | |
| 16 | 428 | June-Reg | Robert Harris | SS | | | | | | A- | | Texas A&M University | |
| 17 | 456 | June-Reg | David Newhan | OF | 21 | 5-10 | 180 | L | R | MLB | 1999-2008 | Pepperdine University | |
| 18 | 484 | June-Reg | Mike Klostermeyer | 1B | | 6-2 | 190 | L | L | A- | | Louisiana State University | |
| 19 | 512** | June-Reg | Jason Hill | C | 20 | 6-0 | 200 | R | R | Ind | | Monte Vista (Danville,CA) | |
| 20 | 540 | June-Reg | David Slemmer | SS-2B | 22 | 6-0 | 187 | R | R | AA | | Missouri State University | |
| 21 | 568 | June-Reg | Bill Knight | OF | | | | | | A- | | University of Massachusetts | |
| 22 | 596 | June-Reg | T.J. Costello | p | 21 | 6-2 | 195 | L | L | A- | | Montclair State University | |
| 23 | 624 | June-Reg | Duane Richner | OF | | | | | | - | | Radford University | |
| 24 | 652 | June-Reg | Steve Connelly | p | 21 | 6-4 | 210 | R | R | MLB | 1998-1998 | University of Oklahoma | |
| 25 | 680 | June-Reg | Brian Callahan | p | | | | | | - | | The Citadel | |
| 26 | 708 | June-Reg | Jeff DaVanon | OF-2B | 21 | 6-0 | 185 | B | R | MLB | 1999-2007 | San Diego State University | |
| 27 | 736 | June-Reg | Ryan Kjos | p | 22 | 6-5 | 217 | R | R | AAA | | University of Texas | |
| 28 | 764 | June-Reg | Victor Hernandez | OF | 18 | 6-0 | 167 | R | R | A+ | | | |
| 29 | 792** | June-Reg | Steve Bess | p | 18 | 6-4 | 225 | R | R | AA | | Montgomery Bell Academy (Nashville,TN) | |
| 30 | 820 | June-Reg | Bill Batchelder | p | 22 | 6-3 | 190 | R | R | A- | | University of New Hampshire | |
| 31 | 848 | June-Reg | Kevin Gunther | p | 22 | 6-0 | 200 | R | R | AA | | Fresno State University | |
| 32 | 876 | June-Reg | Jace Johnson | OF | 20 | 6-0 | 175 | R | R | A- | | Scottsdale Community College | |
| 33 | 904** | June-Reg | Byron Embry | p | 18 | 6-2 | 240 | R | R | AAA | | Madison Central (Richmond,KY) | |
| 34 | 932 | June-Reg | Chris Morrison | p | 23 | 6-0 | 195 | R | R | A+ | | Auburn University | |
| 35 | 960 | June-Reg | Jon French | p | | | | | | A- | | Arkansas State University | |
| 36 | 988** | June-Reg | Ryan Gill | p | 18 | 6-3 | 200 | R | R | A- | | Woodlawn (Baton Rouge,LA) | |
| 37 | 1016 | June-Reg | Rodney Clifton | Of | 18 | 6-2 | 195 | R | R | A+ | | Elgin (Elgin,IL) | |
| 38 | 1044 | June-Reg | Greg Halvorson | C | 18 | 6-5 | 235 | R | R | A+ | | Canyon del Oro (Tucson,AZ) | |
| 39 | 1072 | June-Reg | Matthew Dornfeld | Of | | | | | | - | | Arizona Western College | |
| 40 | 1100 | June-Reg | Robert Norman | p | | | | | | - | | Columbia Academy (Columbia,TN) | |
| 41 | 1128 | June-Reg | Chris Nelson | p | 22 | 6-2 | 180 | B | R | AAA | | Oklahoma State University | |
| 42 | 1156 | June-Reg | Brandon Welch | of | | | | | | A- | | Texas Tech University | |
| 43 | 1184 | June-Reg | Victor Chambers | 2B-of | 19 | 5-10 | 185 | L | R | Ind | | City College of San Francisco | |
| 44 | 1212 | June-Reg | Todd Abbott | p | 21 | 6-4 | 200 | R | R | AAA | | University of Arkansas | |