| 1 | 6 | June-Reg | Jaime Jones | OF | 18 | 6-3 | 190 | L | L | AAA | | Rancho Bernardo (San Diego,CA) | $1,337,000 |
| 2 | 36 | June-Reg | Nate Rolison | 1B | 18 | 6-5 | 240 | L | R | MLB | 2000-2000 | Petal (Petal,MS) | $610,000 |
| 3 | 65 | June-Reg | Randy Winn | OF | 21 | 6-2 | 175 | B | R | MLB | 1998-2009 | Santa Clara University | |
| 4 | 93 | June-Reg | Mike Marriott | P | 18 | 6-3 | 205 | R | R | A+ | | Spring (Spring,TX) | |
| 5 | 121 | June-Reg | Rene Rascon | OF | | 6-4 | 220 | L | L | A+ | | Sonoma State University | |
| 6 | 149 | June-Reg | Michael Tejera | P | 18 | 5-9 | 175 | L | L | MLB | 1999-2005 | | |
| 7 | 177 | June-Reg | Hansel Izquierdo | P | 18 | 6-2 | 205 | R | R | MLB | 2002-2002 | | |
| 8 | 205 | June-Reg | Mark Watson | P | 21 | 6-4 | 235 | R | L | MLB | 2000-2003 | Clemson University | |
| 9 | 233 | June-Reg | Tony Enard | P | 20 | 6-4 | 220 | R | R | A+ | | Fresno State University | |
| 10 | 261 | June-Reg | Bob Pailthorpe | P | 22 | 6-1 | 210 | R | R | A+ | | Santa Clara University | |
| 11 | 289 | June-Reg | Gary Knotts | P | 18 | 6-4 | 200 | R | R | MLB | 2001-2004 | Brewer (Somerville,AL) | |
| 12 | 317 | June-Reg | Jonathan Widerski | p | 18 | 6-4 | 190 | R | R | A+ | | Holy Angels Academy (Richfield,MN) | |
| 13 | 345** | June-Reg | Jerrod Riggan | p | 21 | 6-4 | 185 | R | R | MLB | 2000-2003 | San Diego State University | |
| 14 | 373 | June-Reg | David Miller | p | 21 | 6-3 | 180 | L | L | AAA | | University of North Carolina at Wilmington | |
| 15 | 401 | June-Reg | Rick Garcia | p | 21 | 6-4 | 210 | R | R | A | | Oklahoma City University | |
| 16 | 429 | June-Reg | Gabe Gonzalez | p | 23 | 6-1 | 160 | B | L | MLB | 1998-1998 | Long Beach State University | |
| 17 | 457 | June-Reg | Steve Goodell | SS | 20 | 6-3 | 196 | R | R | AA | | Arizona State University | |
| 18 | 485 | June-Reg | Travis Burgus | p | 22 | 6-2 | 190 | L | L | AAA | | University of San Diego | |
| 19 | 513 | June-Reg | Mike Duvall | p | 20 | 6-0 | 185 | R | L | MLB | 1998-2001 | Potomac State College of WVU | |
| 20 | 541 | June-Reg | Mat Erwin | C | | | | | | A+ | | University of Nevada | |
| 21 | 569 | June-Reg | Joe Funaro | 2B | 22 | 5-9 | 170 | R | R | AAA | | Eastern Connecticut State University | |
| 22 | 597 | June-Reg | Swan Austin | p | 18 | 6-2 | 210 | R | R | Rookie | | | |
| 23 | 625 | June-Reg | Alex Morris | p | 18 | 6-4 | 220 | L | R | A+ | | Westlake (Austin,TX) | |
| 24 | 653 | June-Reg | James Detwiler | p | 19 | 6-1 | 190 | L | L | A- | | Valley Forge Military Academy (Wayne,PA) | |
| 25 | 681 | June-Reg | Kevin Fitzmaurice | p | | | | | | - | | Silver Creek (San Jose,CA) | |
| 26 | 709** | June-Reg | Ryan Tack | p | | | | | | - | | Durango (Las Vegas,NV) | |
| 27 | 737** | June-Reg | Dave Therneau | p | 19 | 6-5 | 195 | R | R | AAA | | Navarro College | |
| 28 | 765 | June-Reg | Jorge Rodriguez | SS | | | | | | - | | | |
| 29 | 793 | June-Reg | Gary Santoro | p | 22 | 6-3 | 205 | R | R | A+ | | Flagler College | |
| 30 | 821 | June-Reg | Euclides Rojas | p | 27 | 6-0 | 190 | R | R | AAA | | | |
| 31 | 849** | June-Reg | Mike Rose | p | 18 | 6-1 | 185 | B | R | MLB | 2004-2006 | Southwood (Shreveport,LA) | |
| 32 | 877** | June-Reg | George Oleksik | p | 21 | 6-4 | 215 | R | R | AAA | | Middle Tennessee State University | |
| 33 | 905 | June-Reg | Todd Bramble | SS | | | | | | Ind | | Sprague (Salem,OR) | |
| 34 | 933 | June-Reg | Kevin Green | Of | 19 | 6-1 | 190 | R | R | A+ | | Mohawk Valley Community College | |
| 35 | 961 | June-Reg | Jason Shanahan | 3B | | | | | | A+ | | Cal State Northridge | |
| 36 | 989 | June-Reg | Tim McClaskey | p | 19 | 5-10 | 170 | R | R | AAA | | Muscatine Community College | |
| 37 | 1017** | June-Reg | Brian Dallimore | 2B | 21 | 6-1 | 185 | R | R | MLB | 2004-2005 | Stanford University | |
| 38 | 1045 | June-Reg | Ken Duebelbeis | p | | | | | | - | | De Anza College | |
| 39 | 1073 | June-Reg | Dion Battee | Of | | | | | | - | | St. Bernard (Playa del Ray,CA) | |
| 40 | 1101** | June-Reg | Matt Blank | p | 19 | 6-2 | 195 | L | L | MLB | 2000-2001 | Galveston College | |
| 41 | 1129 | June-Reg | Dwaine Neal | of | | | | | | - | | Norland (Miami,FL) | |
| 42 | 1157** | June-Reg | Letarvius Copeland | of | | | | | | - | | Jackson (Miami,FL) | |
| 43 | 1185 | June-Reg | Shannon Stephens | p | 21 | 6-2 | 205 | R | R | A+ | | Cal Poly | |
| 44 | 1213 | June-Reg | Jason Garrett | 1B | | | | | | A+ | | University of Texas-Arlington | |
| 45 | 1240 | June-Reg | Rob Hernandez | of | | | | R | R | A- | | Oklahoma State University | |
| 46 | 1265** | June-Reg | Jeff Cermak | of | | | | | | Ind | | Mesa Community College | |
| 47 | 1289** | June-Reg | Rhett Ingerick | p | 20 | 6-6 | 195 | R | R | A- | | Davidson College | |
| 48 | 1312 | June-Reg | Raymond Green | C | 21 | 6-2 | 205 | R | R | Rookie | | Sonoma State University | |
| 49 | 1334 | June-Reg | Rafael Rigueiro | p | 18 | 6-6 | 200 | R | R | A+ | | North (Riverside,CA) | |
| 50 | 1356 | June-Reg | William Reed | of | | | | | | - | | Westchester (Los Angeles,CA) | |
| 51 | 1377 | June-Reg | Aaron Carnes | p | 19 | 6-1 | 192 | R | R | AA | | Sacramento City College | |
| 52 | 1396 | June-Reg | Scott Mckee | C | 18 | 6-0 | 200 | B | R | AAA | | Riverdale Baptist (Upper Marlboro,MD) | |
| 53 | 1415 | June-Reg | Kerthatis Lovely | of | | | | | | - | | Glades Central (Belle Glade,FL) | |
| 54 | 1434 | June-Reg | Howard Bell | p | | | | | | - | | Westchester (Los Angeles,CA) | |
| 55 | 1452 | June-Reg | Darin Baker | of | | | | | | - | | Fallon (Fallon,NV) | |
| 56 | 1469 | June-Reg | Carl Jones | of | 18 | 6-0 | 200 | R | R | - | | Andress (El Paso,TX) | |
| 57 | 1484 | June-Reg | Joel Atwater | of | | | | | | - | | Southern Alamance (Graham,NC) | |
| 58 | 1498 | June-Reg | Richard Circuit | SS | | | | | | - | | La Jolla (La Jolla,CA) | |
| 59 | 1512 | June-Reg | Mark Greenlee | p | | | | | | - | | Triton College | |
| 60 | 1525 | June-Reg | William Fleck | p | 18 | 6-0 | 175 | R | R | AA | | Mercer County Community College | |
| 61 | 1535 | June-Reg | Scott Esker | 3B | | | | | | - | | College of the Redwoods | |
| 62 | 1544 | June-Reg | Michael Laine | p | | | | | | - | | Connally (Austin,TX) | |
| 63 | 1553 | June-Reg | Druen Mahony | SS | | | | | | - | | Hillcrest (Simpsonville,SC) | |
| 64 | 1562 | June-Reg | Quincy Foster | of | 20 | 6-2 | 175 | L | R | AAA | | Spartanburg Methodist College | |
| 65 | 1570 | June-Reg | James Nederostek | p | 18 | 6-4 | 240 | R | L | - | | St. Mary's (Stockton,CA) | |
| 66 | 1578** | June-Reg | Rob Hammock | C | 18 | 6-0 | 190 | R | R | MLB | 2003-2008 | South Cobb (Austell,GA) | |
| 67 | 1585 | June-Reg | Matt Pidgeon | SS | 18 | 6-4 | 200 | R | R | A | | Eureka (Eureka,CA) | |
| 68 | 1592 | June-Reg | Andy Bair | p | 18 | 6-5 | 255 | L | L | A- | | Calvert Hall (Baltimore,MD) | |
| 69 | 1599 | June-Reg | Jason Berry | p | | | | | | A+ | | Mountain View (Orem,UT) | |
| 70 | 1605 | June-Reg | William Tul | p | | | | | | - | | Gloucester County College | |
| 71 | 1611 | June-Reg | Derek Rowan | of | | | | | | - | | Mesa Community College | |
| 72 | 1616 | June-Reg | William Boughey | p | 18 | 6-3 | 205 | L | R | Ind | | Berkmar (Lilburn,GA) | |
| 73 | 1620 | June-Reg | Jay Gospodarek | p | | | | | | - | | Pima Community College | |
| 74 | 1624 | June-Reg | Stephen Blevins | 1B | | | | | | - | | Spotsylvania (Spotsylvania,VA) | |
| 75 | 1628 | June-Reg | Kevin Tolan | p | | | | | | - | | Citrus College | |
| 76 | 1632 | June-Reg | Dusty Keppen | p | 18 | 6-1 | 210 | R | R | Ind | | Central Gwinnett (Lawrenceville,GA) | |
| 77 | 1636 | June-Reg | Eric Kalie | SS | | | | | | - | | Martin County (Stuart,FL) | |
| 78 | 1639 | June-Reg | Brett Schreyer | p | 18 | 6-2 | 215 | R | R | A- | | Paul VI (Waterford,NJ) | |
| 79 | 1642** | June-Reg | Joel Sajiun | of | | | | | | Rookie | | | |
| 80 | 1645 | June-Reg | Tim Hicks | of | | | | | | - | | Gordon College | |
| 81 | 1648** | June-Reg | Shannon Carter | p | 16 | 6-0 | 180 | L | L | AAA | | Gate City (Gate City,VA) | |
| 82 | 1651** | June-Reg | Brian Bush | of | 18 | 6-1 | 180 | R | R | A+ | | Howland (Warren,OH) | |
| 84 | 1656** | June-Reg | Ryan Roberts | SS | 21 | 6-3 | 195 | R | R | A | | Brigham Young University | |
| 85 | 1659 | June-Reg | Andrew Lecrone | 3B | 18 | 6-3 | 207 | | | - | | Downers Grove North (Downers Grove,IL) | |
| 86 | 1662 | June-Reg | John Schmitz | of | 19 | 6-0 | 190 | L | R | Ind | | College of San Mateo | |
| 87 | 1664 | June-Reg | Brian Haught | SS | | 5-10 | 164 | R | R | College | | Jesuit (Tampa,FL) | |