| 1 | 8 | June-Reg | Todd Helton | 1B-P | 21 | 6-2 | 206 | L | L | MLB | 1997-2009 | University of Tennessee | $892,500 |
| 2 | 38 | June-Reg | Ben Petrick | C | 18 | 6-0 | 199 | R | R | MLB | 1999-2003 | Glencoe (Hillsboro,OR) | $495,000 |
| 3 | 67 | June-Reg | Chris Macca | P | 20 | 6-2 | 185 | R | R | AA | | Saint Leo University | |
| 4 | 95 | June-Reg | John Clark | SS | 18 | 6-4 | 205 | R | R | A- | | Clements School (Sugar Land,TX) | |
| 5 | 123 | June-Reg | Mike Vavrek | P | 21 | 6-2 | 185 | L | L | AAA | | Lewis University | |
| 6 | 151 | June-Reg | Chandler Martin | P | 21 | 6-1 | 192 | R | R | AAA | | University of Portland | |
| 7 | 179 | June-Reg | Cristy Rosa | P | 17 | 6-1 | 160 | R | R | A+ | | | |
| 8 | 207 | June-Reg | Tal Light | 3B | 21 | 6-3 | 205 | R | R | AA | | Oklahoma State University | |
| 9 | 235 | June-Reg | Jamie Emiliano | P | 20 | 5-10 | 210 | R | R | AAA | | Florida International University | |
| 10 | 263 | June-Reg | Gary Gordon | OF | 18 | 5-10 | 190 | R | R | A+ | | Willingboro (Willingboro,NJ) | |
| 11 | 291 | June-Reg | Scott Randall | P | 19 | 6-3 | 200 | R | R | MLB | 2003-2003 | Santa Barbara City College | |
| 12 | 319 | June-Reg | Brian Kirkpatrick | SS | 18 | 6-3 | 195 | R | R | A- | | King City (King City,CA) | |
| 13 | 347 | June-Reg | John Lindsey | 1B | 18 | 6-3 | 220 | R | R | AAA | | Hattiesburg (Hattiesburg,MS) | |
| 14 | 375 | June-Reg | Pat Williams | p | 19 | 6-0 | 180 | R | R | Rookie | | Mount San Antonio College | |
| 15 | 403 | June-Reg | John Mahlberg | p | 18 | 6-2 | 197 | R | R | A | | Douglas (Dillard,GA) | |
| 16 | 431 | June-Reg | Chris Druckrey | p | 20 | 6-5 | 220 | R | R | A- | | Kankakee Community College | |
| 17 | 459 | June-Reg | Garrett Neubart | OF | 21 | 5-10 | 160 | R | R | AAA | | Columbia University | |
| 18 | 487 | June-Reg | Heath Bost | p | 20 | 6-3 | 195 | R | R | AAA | | Catawba College. | |
| 19 | 515 | June-Reg | John Clifford | C | 21 | 6-1 | 185 | R | R | A+ | | Villanova University | |
| 20 | 543 | June-Reg | Bobby Bevel | p | 21 | 5-10 | 180 | L | L | AAA | | Xavier University | |
| 21 | 571 | June-Reg | Blake Barthol | OF | 22 | 6-0 | 200 | R | R | AAA | | Eastern Kentucky University | |
| 22 | 599 | June-Reg | David Groseclose | SS | 22 | 5-11 | 165 | R | R | A | | Virginia Military Institute | |
| 23 | 627 | June-Reg | David Lee | p | 22 | 6-1 | 202 | R | R | MLB | 1999-2004 | Mercyhurst College | |
| 24 | 655 | June-Reg | Carlos Vidal | C | 20 | 5-10 | 188 | R | R | A+ | | Miami-Dade College | |
| 25 | 683 | June-Reg | Reggie Douglas | p | 18 | 6-5 | 220 | R | R | Rookie | | Dorsey (Los Angeles,CA) | |
| 26 | 711 | June-Reg | Matt Whitley | SS | 23 | 6-0 | 170 | R | R | AA | | University of Tennessee | |
| 27 | 739 | June-Reg | J.J. Moore | p | | | | | | - | | Burnsville (Burnsville,MN) | |
| 28 | 767** | June-Reg | Rodney Nye | 3B | 18 | 6-4 | 215 | R | R | AAA | | Cameron (Cameron,OK) | |
| 29 | 795 | June-Reg | Marc Brzozoski | OF | 21 | 6-1 | 195 | R | R | A- | | Shorter College | |
| 30 | 823 | June-Reg | Brett Elam | SS | 22 | 6-0 | 170 | R | R | A+ | | McNeese State University | |
| 31 | 851 | June-Reg | Sean Murphy | p | 22 | 6-1 | 180 | R | R | A+ | | University of North Carolina | |
| 32 | 879 | June-Reg | Brad Reitzenstein | p | | | | | | A- | | University of Portland | |
| 33 | 907 | June-Reg | David Feuerstein | OF | 21 | 6-2 | 200 | R | R | AA | | Yale University | |
| 34 | 935** | June-Reg | Ryan Kohlmeier | p | 18 | 6-2 | 223 | R | R | MLB | 2000-2001 | Chase County (Cottonwood Falls,KS) | |
| 35 | 963 | June-Reg | Brian Bowman | C | | | | | | - | | Garces Memorial (Bakersfield,CA) | |
| 36 | 991** | June-Reg | Jeremy Jones | C | 17 | 6-3 | 195 | R | R | AA | | Raymore Peculiar (Raymore,MO) | |
| 37 | 1019** | June-Reg | Josh Kalinowski | p | 18 | 6-2 | 190 | L | L | AA | | Natrona County (Casper,WY) | |
| 38 | 1047 | June-Reg | Scott Brent | Of | | | | | | - | | Linden (Linden,CA) | |
| 39 | 1075 | June-Reg | Matt Montgomery | p | | | | | | - | | Santiago Canyon College | |
| 40 | 1103 | June-Reg | Brandon Lenox | SS | | | | | | - | | Red Mountain (Mesa,AZ) | |
| 41 | 1131 | June-Reg | Jason Pozo | p | 19 | 6-4 | 205 | R | R | Rookie | | Ocean County College | |
| 42 | 1159 | June-Reg | Damione Merriman | of | | | 0 | | | - | | Cheraw (Cheraw,SC) | |
| 43 | 1187** | June-Reg | Anthony Taylor | p | | | | | | - | | Pueblo (Tucson,AZ) | |
| 44 | 1215 | June-Reg | Derek Corbett | p | | | | | | - | | Highland (Gilbert,AZ) | |
| 45 | 1242 | June-Reg | Mike Medina | of | | | | | | - | | Moody (Corpus Christi,TX) | |
| 46 | 1267 | June-Reg | Brad Schwartzbauer | C-3B | 18 | 6-1 | 185 | L | R | A+ | | White Bear Lake Area (White Bear Lake,MN) | |
| 47 | 1291 | June-Reg | Ali Samadani | rp | | | | | | A- | | College of Marin | |
| 48 | 1313 | June-Reg | Kent Zweifel | 1B | 18 | 6-3 | 210 | R | R | A | | Henley (Klamath Falls,OR) | |
| 49 | 1335 | June-Reg | Justin Drizos | 1B | 21 | 6-2 | 200 | L | L | A+ | | University of Nevada | |
| 50 | 1357 | June-Reg | Andres Mitchell | SS | 19 | 6-1 | 185 | R | R | A+ | | Motlow State Community College | |
| 51 | 1378** | June-Reg | Roddy Friar | C | 19 | 6-0 | 190 | R | R | A+ | | Temecula Valley (Temecula,CA) | |
| 52 | 1397 | June-Reg | Chris Rodriguez | C | 19 | 6-2 | 190 | R | R | A | | Modesto Junior College | |
| 53 | 1416** | June-Reg | Casey Kelley | 1B | 18 | 6-2 | 220 | L | R | A | | Ellensburg (Ellensburg,WA) | |
| 54 | 1435 | June-Reg | Dan Ledesma | SS | | | | | | - | | Moody (Corpus Christi,TX) | |
| 55 | 1453 | June-Reg | Derek Sawyer | SS | | | | | | - | | Osceola (Kissimmee,FL) | |
| 56 | 1470 | June-Reg | James Slaughter | of | | | | | | - | | San Joaquin Delta College | |
| 57 | 1485 | June-Reg | John Garrison | p | | | | | | - | | San Joaquin Delta College | |
| 58 | 1499 | June-Reg | Gabriel Foster | p | | | | | | Ind | | Santa Rosa Junior College | |