| 1 | 9 | June-Reg | C.J. Nitkowski | P | 21 | 6-3 | 205 | L | L | MLB | 1995-2005 | St. John's University | $675,000 |
| 2 | 43 | June-Reg | Tony Terry | OF | 18 | 6-1 | 185 | B | R | A- | | Abbeville (Abbeville,SC) | $125,000 |
| 3 | 72 | June-Reg | Aaron Boone | 3B | 21 | 6-2 | 200 | R | R | MLB | 1997-2009 | USC | |
| 5 | 128 | June-Reg | Clay Caruthers | P | 21 | 6-2 | 200 | B | R | AA | | Texas Christian University | |
| 6 | 156 | June-Reg | Clint Koppe | P | 20 | 6-4 | 220 | R | R | AA | | University of Texas | |
| 7 | 184 | June-Reg | Decomba Conner | OF | 20 | 5-10 | 185 | R | R | AA | | North Greenville College | |
| 8 | 212** | June-Reg | Scott Brand | P | 18 | 6-3 | 200 | R | R | A | | Monterey (Lubbock,TX) | |
| 9 | 240 | June-Reg | Eddie Priest | P | 20 | 6-1 | 195 | R | L | MLB | 1998-1998 | Southern Union State Community College | |
| 10 | 268 | June-Reg | Dustin Dabbs | C | | | | | | - | | Tupelo (Tupelo,MS) | |
| 11 | 296 | June-Reg | Bryant Dickinson | SS-2B | | 5-11 | 155 | R | R | - | | Millbrook (Raleigh,NC) | |
| 12 | 324 | June-Reg | Darron Ingram | OF | 18 | 6-3 | 225 | R | R | AAA | | Bryan Station (Lexington,KY) | |
| 13 | 352 | June-Reg | Brian Lott | p | 22 | 6-0 | 200 | R | R | AA | | McNeese State University | |
| 14 | 380 | June-Reg | Clint Fair | p | | | | | | - | | Georgia Southern University | |
| 15 | 408 | June-Reg | Jay Sorg | 3B | 21 | 6-3 | 195 | L | R | AA | | Morehead State University | |
| 16 | 436** | June-Reg | Kevin Gryboski | p | 20 | 6-5 | 220 | R | R | MLB | 2002-2006 | Wilkes University | |
| 17 | 464 | June-Reg | Tony Boyette | C | 18 | 6-0 | 200 | R | R | A | | Santa Fe (Alachua,FL) | |
| 18 | 492 | June-Reg | Dan Masse | p | 20 | 6-5 | 215 | R | R | Rookie | | Northeastern Oklahoma A&M College | |
| 19 | 520 | June-Reg | Justin Smith | p | | | | | | A | | Gulf Coast Community College | |
| 20 | 548 | June-Reg | Wayne Ennis | 1B | | | | | | Rookie | | Millbrook (Raleigh,NC) | |
| 21 | 576 | June-Reg | Scott Savary | OF | 21 | 6-3 | 195 | R | R | A | | Clarke College | |
| 22 | 604 | June-Reg | John Riedling | p | 18 | 5-11 | 190 | R | R | MLB | 2000-2005 | Blanche Ely (Pompano Beach,FL) | |
| 23 | 632** | June-Reg | Terry Weaver | 3B | | | | | | AA | | Liberty University | |
| 24 | 660** | June-Reg | Andrew Zwirchitz | p-SS | 18 | 6-2 | 200 | R | R | A+ | | Appleton East (Appleton,WI) | |
| 25 | 688 | June-Reg | Scott Sharp | OF | 21 | 6-2 | 200 | R | R | A+ | | George Washington University | |
| 26 | 716 | June-Reg | Marc Weiss | p | 20 | 6-4 | 205 | R | R | A | | California Lutheran University | |
| 27 | 744 | June-Reg | Adam Bryant | p | 22 | 6-6 | 225 | R | R | AA | | Virginia Commonwealth University | |
| 28 | 772 | June-Reg | Ray Brown | 1B | 21 | 6-2 | 205 | L | R | AAA | | Sacramento State | |
| 29 | 800 | June-Reg | Tony Nieto | p | 21 | 6-1 | 170 | B | R | AA | | USC | |
| 30 | 828 | June-Reg | Nick Morrow | OF | 22 | 5-11 | 180 | R | R | AA | | Vanderbilt University | |
| 31 | 856 | June-Reg | Jeff Andrews | C | 22 | 6-0 | 185 | R | R | Rookie | | Auburn University-Montgomery | |
| 32 | 884 | June-Reg | Cedric Allen | p | 22 | 5-10 | 183 | L | L | AA | | University of Mary Hardin-Baylor | |
| 33 | 912 | June-Reg | Brian Wilson | SS | 21 | 6-1 | 185 | R | R | A+ | | University of Texas-San Antonio | |
| 34 | 940** | June-Reg | Paul Rigdon | p | 18 | 6-5 | 210 | R | R | MLB | 2000-2001 | Florida Community College | |
| 35 | 968 | June-Reg | Doyle Preston | 3B-1b | 11 | 6-3 | 195 | L | R | A | | University of Arkansas | |
| 36 | 996 | June-Reg | Ed Rores | Of | | | | | | - | | South (Bakersfield,CA) | |
| 37 | 1024 | June-Reg | Damon Callahan | p | 18 | 6-4 | 190 | R | R | AA | | Bradley Central (Cleveland,TN) | |
| 38 | 1052 | June-Reg | Brandon Credeur | Of | | | | | | - | | University of Louisiana at Lafayette | |
| 39 | 1080** | June-Reg | Jeff Hutzler | p | 21 | 6-6 | 225 | R | R | AA | | University of Texas-San Antonio | |
| 40 | 1107 | June-Reg | Marlon Allen | 1B | 21 | 6-6 | 228 | R | R | AA | | Columbus State University | |
| 41 | 1133** | June-Reg | David Guthrie | SS | 20 | 6-2 | 185 | B | R | AA | | Southern Union State Community College | |
| 42 | 1159** | June-Reg | Isaac Burton | of | 21 | 6-4 | 193 | R | R | Rookie | | Arizona State University | |
| 43 | 1185** | June-Reg | Kevin Shipp | p | 19 | 5-11 | 190 | R | R | A+ | | Meridian Community College | |
| 44 | 1211 | June-Reg | Chad Angerhofer | ip | 18 | 6-1 | 190 | L | L | Ind | | Oak Hall (Gainesville,FL) | |
| 45 | 1237 | June-Reg | Patrick Zicka | p | | | | | | - | | Indian Hill (Cincinnati,OH) | |
| 46 | 1261 | June-Reg | Tim Bell | p | | | | | | - | | Bakersfield (Bakersfield,CA) | |
| 47 | 1285 | June-Reg | Malcolm King | 1B-of | | | | | | - | | Oak Hall (Gainesville,FL) | |