| 1 | 26 | June-Reg | Mark Johnson | C | 18 | 6-0 | 185 | L | R | MLB | 1998-2008 | Warner Robins (Warner Robins,GA) | $520,000 |
| 1 | 33 | June-Reg | Chris Clemons | P | 21 | 6-4 | 220 | R | R | MLB | 1997-1997 | Texas A&M University | $295,000 |
| 2 | 41 | June-Reg | John Ambrose | P | 19 | 6-5 | 180 | R | R | AAA | | John A. Logan College | $225,000 |
| 2 | 60 | June-Reg | Jerry Whittaker | OF | 20 | 6-2 | 190 | R | R | AA | | University of Oklahoma | $160,000 |
| 3 | 89 | June-Reg | Carlos Castillo | P | 19 | 6-2 | 250 | R | R | MLB | 1997-2001 | | |
| 4 | 117 | June-Reg | Jeff Abbott | OF | 21 | 6-2 | 200 | R | L | MLB | 1997-2001 | University of Kentucky | |
| 5 | 145 | June-Reg | Doug Bearden | SS | 18 | 6-2 | 180 | R | R | AA | | Lexington (Lexington,SC) | |
| 6 | 173 | June-Reg | Shane Buteaux | P | 22 | 6-3 | 202 | R | R | AA | | University of Houston | |
| 7 | 201 | June-Reg | Dennis Crine | P | | | | | | A | | Saddleback College | |
| 8 | 229 | June-Reg | Ryan Helms | SS | | | | | | Rookie | | Western Hills (Cincinnati,OH) | |
| 9 | 257 | June-Reg | Sean Bagley | C | | | | | | A- | | Gig Harbor (Gig Harbor,WA) | |
| 10 | 285 | June-Reg | Tom McCaskey | P | 18 | 6-3 | 200 | R | R | Rookie | | San Marcos (San Marcos,CA) | |
| 11 | 313 | June-Reg | Russ Herbert | P | 22 | 6-3 | 190 | R | R | AAA | | Ohio University | |
| 12 | 341 | June-Reg | Carlos Chantres | p | 18 | 6-3 | 175 | R | R | AAA | | Columbus (Miami,FL) | |
| 13 | 369 | June-Reg | Brian Drent | OF | 20 | 6-3 | 205 | R | R | A | | Indian Hills Community College-Centerville | |
| 14 | 397 | June-Reg | David Cancel | OF | 20 | 5-11 | 168 | B | R | A | | Indian Hills Community College-Centerville | |
| 15 | 425 | June-Reg | Sean Duncan | p | 21 | 6-2 | 195 | L | L | AA | | University of Miami | |
| 16 | 453 | June-Reg | Rashad Albert | OF | 18 | 6-1 | 165 | R | R | A+ | | Fernandina Beach (Fernandina Beach,FL) | |
| 17 | 481 | June-Reg | Brandon Moore | SS | 21 | 5-11 | 175 | R | R | AAA | | Auburn University | |
| 18 | 509 | June-Reg | John McConnell | p | | | | | | A- | | La Salle (Cincinnati,OH) | |
| 19 | 537 | June-Reg | Luis Garcia | OF | 18 | 6-3 | 208 | R | R | MLB | 2002-2002 | Miami Senior (Miami,FL) | |
| 20 | 565 | June-Reg | Jeremy Griffith | p | | | | | | Rookie | | Etowah (Attalla,AL) | |
| 21 | 593 | June-Reg | Steve Leonard | 3B-OF | | 6-2 | 206 | R | R | College | | MacArthur (San Antonio,TX) | |
| 22 | 621** | June-Reg | Charley Carter | 1B | 18 | 6-2 | 205 | R | R | AA | | Mount Pleasant (Mount Pleasant,TX) | |
| 23 | 649 | June-Reg | Marvin Horn | 1B | 19 | 6-4 | 195 | L | L | Rookie | | El Camino College | |
| 24 | 677** | June-Reg | Adam Bernero | p | 17 | 6-4 | 205 | R | R | MLB | 2000-2006 | | |
| 25 | 705 | June-Reg | Conan Horton | C | 20 | 6-1 | 220 | B | R | A+ | | Sacramento City College | |
| 26 | 733 | June-Reg | Tom Koerick | C-3B | | 6-3 | 210 | R | R | A | | Villanova University | |
| 27 | 761 | June-Reg | Jamie Nichols | p | 18 | 6-5 | 215 | R | R | AA | | St. Mark's (Wilmington,DE) | |
| 28 | 789** | June-Reg | Todd Johannes | C | 17 | 6-3 | 185 | R | R | AAA | | Westminster Christian (Miami,FL) | |
| 29 | 817** | June-Reg | David Harden | p | | | | | | - | | Shawnee Mission West (Shawnee Mission,KS) | |
| 30 | 845 | June-Reg | Eric Gagne | p | 18 | 6-2 | 195 | R | R | MLB | 1999-2008 | | |
| 31 | 873 | June-Reg | Robert Hicks | OF | 18 | 5-10 | 185 | B | L | - | | Milby (Houston,TX) | |
| 32 | 901 | June-Reg | James Molina | OF | 18 | 6-1 | 210 | R | R | A- | | | |
| 33 | 929 | June-Reg | Kerron Bradford | Of | | | | | | - | | Rancoccas Valley Regional (Mount Holly,NJ) | |
| 34 | 957** | June-Reg | Chad Bradford | p | 19 | 6-5 | 205 | R | R | MLB | 1998-2009 | Hinds Community College | |
| 35 | 985 | June-Reg | Ryan Nicks | p | | | | | | - | | Gahr (Cerritos,CA) | |
| 36 | 1013 | June-Reg | Clayton Stevens | Of | 18 | 6-3 | 210 | R | R | A | | Faulkner State Community College | |
| 37 | 1041 | June-Reg | Darren Merrill | SS | | | | | | Rookie | | Los Altos (Hacienda Heights,CA) | |
| 38 | 1069 | June-Reg | Miles Campbell | p | | | | | | - | | Los Alamitos (Los Alamitos,CA) | |
| 39 | 1097** | June-Reg | Randy Hamilton | p | 16 | 6-3 | 190 | L | L | Rookie | | Simon Kenton (Independence,KY) | |
| 40 | 1123 | June-Reg | John Pollard | of | | | | | | - | | | |
| 41 | 1149** | June-Reg | Nathan Forbush | 1B | 18 | 6-2 | 220 | B | R | A+ | | Bingham (South Jordan,UT) | |
| 42 | 1175 | June-Reg | Eliot Montijo | 3B | | | | | | - | | Benson Union (Benson,AZ) | |
| 43 | 1201 | June-Reg | Dustin Wright | p | | | | | | - | | Itawamba Community College | |
| 44 | 1227 | June-Reg | Jason Olsen | p-3B | 19 | 6-4 | 210 | R | R | AAA | | Napa Valley College | |
| 45 | 1252** | June-Reg | Kevin Culmo | p | 19 | 6-2 | 190 | R | R | A- | | Sacramento City College | |
| 46 | 1276 | June-Reg | Tom Sullivan | p | | | | | | - | | Indian Hills Community College-Centerville | |
| 47 | 1299 | June-Reg | Mike Tidick | of | | | | | | A | | Western Carolina University | |
| 48 | 1319 | June-Reg | Brian Horner | C-1B | | | | | | - | | Washington (Wenona,MD) | |
| 49 | 1339** | June-Reg | Nathan Koepke | 1B | | | | | | - | | Long Beach City College | |
| 50 | 1359 | June-Reg | Edgar Malin | of | | | | | | Rookie | | Memorial (West New York,NJ) | |
| 51 | 1379 | June-Reg | Daniel McCluskey | C | | | | | | - | | King (Metairie,LA) | |
| 52 | 1399 | June-Reg | Brett Bredensteiner | of | | | | L | R | - | | Duchesne (St. Charles,MO) | |
| 53 | 1418 | June-Reg | Michael Bova | p | | | | | | - | | American (Hialeah,FL) | |
| 54 | 1436 | June-Reg | Chris Simonson | 1B | | | | | | - | | | |