| 1 | 12 | June-Reg | Nomar Garciaparra | SS | 20 | 6-0 | 175 | R | R | MLB | 1996-2009 | Georgia Tech | $895,000 |
| 3 | 75 | June-Reg | Brian Rose | P | 18 | 6-3 | 215 | R | R | MLB | 1997-2001 | Dartmouth (South Dartmouth,MA) | |
| 4 | 103 | June-Reg | Robb Welch | P | 18 | 6-4 | 201 | R | R | A+ | | Twin Falls (Twin Falls,ID) | |
| 5 | 131 | June-Reg | Brian Barkley | P | 18 | 6-2 | 180 | L | L | MLB | 1998-1998 | Midway (Waco,TX) | |
| 6 | 159 | June-Reg | Joe Mamott | P | | | | | | A | | Canisius College | |
| 7 | 187 | June-Reg | Denis McLaughlin | P | 21 | 6-5 | 215 | R | R | A+ | | Old Dominion University | |
| 8 | 215 | June-Reg | Chad Barnhardt | C | | | | | | - | | Lake Wales (Lake Wales,FL) | |
| 9 | 243 | June-Reg | Chris Allison | 2B | 22 | 5-10 | 165 | R | R | AAA | | Bradley University | |
| 10 | 271 | June-Reg | Damian Sapp | C | 18 | 6-3 | 240 | R | R | AAA | | Pleasant Grove (Pleasant Grove,UT) | |
| 11 | 299 | June-Reg | Donnie Sadler | SS | 19 | 5-6 | 175 | R | R | MLB | 1998-2007 | Valley Mills (Valley Mills,TX) | |
| 12 | 327 | June-Reg | Antonio Santiago | p | 17 | 6-1 | 185 | L | L | A- | | | |
| 13 | 355 | June-Reg | Carl Pavano | p | 18 | 6-5 | 230 | R | R | MLB | 1998-2009 | Southington (Southington,CT) | |
| 14 | 383 | June-Reg | Mike Jacobs | p | | | | | | A | | East Carolina University | |
| 15 | 411 | June-Reg | Matt Bazzani | C | 20 | 6-0 | 205 | R | R | A+ | | University of California-Santa Barbara | |
| 16 | 439 | June-Reg | Chuck Malloy | p | | | | | | AA | | Saint Joseph's University | |
| 17 | 467** | June-Reg | Bobby Moore | p | 21 | 6-5 | 217 | R | R | AA | | University of Hawaii | |
| 18 | 495 | June-Reg | Michael Coleman | OF | 18 | 5-11 | 215 | R | R | MLB | 1997-2001 | Stratford (Nashville,TN) | |
| 19 | 523 | June-Reg | Tony Derosso | 1B | 18 | 6-3 | 226 | R | R | AA | | Colquitt County (Moultrie,GA) | |
| 20 | 551 | June-Reg | Bartt Carney | OF | 20 | 5-11 | 170 | B | R | AAA | | Indian Hills Community College-Centerville | |
| 21 | 579 | June-Reg | Chris Westcott | p | 21 | 6-3 | 200 | R | R | Ind | | University of New Orleans | |
| 22 | 607 | June-Reg | Shawn Rogers | OF | | | | | | - | | University of Hawaii | |
| 23 | 635** | June-Reg | Casey Child | OF | 18 | 6-2 | 185 | R | R | A | | Mountain View (Orem,UT) | |
| 24 | 663 | June-Reg | Robert Butler | p | 19 | 6-0 | 185 | R | L | Rookie | | Rend Lake College | |
| 25 | 691 | June-Reg | Marc Lewis | OF | 19 | 6-2 | 185 | R | R | AAA | | Calhoun Community College | |
| 26 | 719 | June-Reg | Jayson Black | p | 18 | 6-2 | 195 | R | R | Rookie | | Crestview (Convoy,OH) | |
| 27 | 747 | June-Reg | Keith Goodwin | OF | 19 | 6-2 | 188 | R | R | A | | Sulphur (Sulphur,LA) | |
| 28 | 775 | June-Reg | Torrance Miller | OF | | | | | | - | | South Georgia College | |
| 29 | 803 | June-Reg | Nathan Barns | OF | | | | | | - | | Central (Rapid City,SD) | |
| 30 | 831** | June-Reg | John McNeese | p | 22 | 6-0 | 180 | R | L | A+ | | University of Mississippi | |
| 31 | 859** | June-Reg | Dave Elliott | OF | 20 | 6-2 | 192 | R | R | AA | | Western Michigan University | |
| 32 | 887 | June-Reg | Wayne Montgomery | p | | | | | | - | | Steubenville (Steubenville,OH) | |
| 33 | 915 | June-Reg | John Raifstanger | 2B | 21 | 6-0 | 190 | R | R | AA | | Springfield College | |
| 34 | 943** | June-Reg | Dave Maurer | p | 19 | 6-2 | 205 | R | L | MLB | 2000-2004 | Howard College | |
| 35 | 971** | June-Reg | Derrick Lewis | p | 18 | 6-5 | 215 | R | R | AAA | | Lanier (Montgomery,AL) | |
| 36 | 999** | June-Reg | Angel Diaz | Of | 17 | 6-0 | 198 | R | R | AAA | | Lake Gibson (Lakeland,FL) | |
| 37 | 1027** | June-Reg | Jack Koch | p | 17 | 6-3 | 220 | R | R | A- | | Osceola (Kissimmee,FL) | |
| 38 | 1055 | June-Reg | Joe Robinson | SS | | | | | | - | | Indian Hills Community College-Centerville | |
| 39 | 1083** | June-Reg | Tim Palmer | Of | | | | | | - | | Fresno City College | |
| 40 | 1110** | June-Reg | Pat Daneker | p | 18 | 6-3 | 195 | R | R | MLB | 1999-1999 | Loyalsock Township (Williamsport,PA) | |
| 41 | 1136 | June-Reg | Jessie Thompson | of | | | | | | - | | Hinds Community College | |
| 42 | 1162 | June-Reg | Ken Arnold | 3B | 25 | 6-1 | 180 | R | R | AA | | Chipola College | |
| 43 | 1188 | June-Reg | Dexter Battle | 1B | | | | | | - | | Hillsborough (Tampa,FL) | |
| 44 | 1214 | June-Reg | Mike Whitley | p | | | | | | - | | Missouri State University | |
| 45 | 1240 | June-Reg | Rene Justiniano | p | 20 | 6-1 | 188 | R | R | Rookie | | Triton College | |
| 46 | 1264 | June-Reg | Chris Kurek | C | | | | | | A | | St. Bonaventure University | |
| 47 | 1287** | June-Reg | Jamey Price | p | 22 | 6-7 | 220 | L | R | AAA | | University of Mississippi | |