| 1 | 13 | June-Reg | Paul Konerko | C | 18 | 6-3 | 211 | R | R | MLB | 1997-2009 | Chaparral (Scottsdale,AZ) | $830,000 |
| 2 | 47 | June-Reg | Gary Rath | P | 21 | 6-2 | 186 | L | L | MLB | 1998-1999 | Mississippi State University | $219,000 |
| 3 | 76 | June-Reg | Mike Metcalfe | SS | 21 | 5-10 | 175 | R | R | MLB | 1998-2000 | University of Miami | |
| 4 | 104 | June-Reg | Ricky Stone | P | 19 | 6-1 | 168 | R | R | MLB | 2001-2007 | Hamilton (Hamilton,OH) | |
| 5 | 132 | June-Reg | Chris Ochsenfeld | P | 17 | 6-2 | 200 | L | L | A+ | | Bethel (Hampton,VA) | |
| 6 | 160** | June-Reg | Eric DuBose | P | 18 | 6-3 | 231 | L | L | MLB | 2002-2006 | Patrician Academy (Butler,AL) | |
| 7 | 188 | June-Reg | Jamie Jaye | P | 21 | 6-7 | 235 | L | L | A+ | | University of South Alabama | |
| 8 | 216** | June-Reg | Jason Huisman | SS | 18 | 6-3 | 195 | R | R | AA | | Thornwood (South Holland,IL) | |
| 9 | 244** | June-Reg | C.J. Ankrum | OF | 18 | 6-1 | 185 | L | L | A- | | Saratoga (Saratoga,CA) | |
| 10 | 272 | June-Reg | Ron Hollis | P | 20 | 6-3 | 205 | L | R | AA | | University of Michigan | |
| 11 | 300 | June-Reg | Al Fajardo | P | 18 | 6-0 | 180 | R | R | AAA | | Coral Gables (Coral Gables,FL) | |
| 12 | 328 | June-Reg | Greg Thompson | p-OF | 18 | 6-2 | 195 | R | R | A- | | Goddard (Roswell,NM) | |
| 13 | 356 | June-Reg | Brian Harmon | OF | 18 | 6-2 | 215 | R | R | A | | Marist (Chicago,IL) | |
| 14 | 384 | June-Reg | Eddie Oropesa | p | 22 | 6-3 | 215 | L | L | MLB | 2001-2004 | | |
| 15 | 412** | June-Reg | Alex Andreopoulos | C | 21 | 5-10 | 190 | L | R | AAA | | Seton Hall University | |
| 16 | 440 | June-Reg | Ken Kilian | OF | | | | | | - | | Wheaton Warrenville South (Warrenville,IL) | |
| 17 | 468 | June-Reg | Kevin Zellers | SS-2B | 21 | 6-1 | 180 | R | R | A+ | | Kent State University | |
| 18 | 496 | June-Reg | J.P. Roberge | 1B | 21 | 6-1 | 180 | R | R | AAA | | USC | |
| 19 | 524 | June-Reg | Kyle Cooney | C | 21 | 6-2 | 200 | R | R | AA | | University of Connecticut | |
| 20 | 552** | June-Reg | Brett Tomko | p | 21 | 6-4 | 216 | R | R | MLB | 1997-2009 | Mount San Antonio College | |
| 21 | 580** | June-Reg | Brock Rumfield | SS-3B | 18 | 6-1 | 185 | R | R | A+ | | Belton (Belton,TX) | |
| 22 | 608 | June-Reg | Adam Riggs | 2B | 21 | 6-0 | 190 | R | R | MLB | 1997-2004 | University of South Carolina | |
| 23 | 636 | June-Reg | Johnny Hilo | OF | 20 | 6-2 | 175 | L | R | A+ | | Cal State Los Angeles | |
| 24 | 664 | June-Reg | Zachary Hines | SS | | | | | | - | | Georgia Perimeter College | |
| 25 | 692** | June-Reg | Randy Wolf | p | 17 | 6-0 | 194 | L | L | MLB | 1999-2009 | El Camino Real (Woodland Hills,CA) | |
| 26 | 720 | June-Reg | Jason Reed | p | 21 | 6-3 | 215 | L | L | A+ | | Grossmont College | |
| 27 | 748 | June-Reg | George Dearborn | p | | | | | | - | | Mountain View (Vancouver,WA) | |
| 28 | 776 | June-Reg | Ben Butkus | SS | 18 | 6-2 | 170 | R | R | Rookie | | Dr. Phillips (Orlando,FL) | |
| 29 | 804 | June-Reg | Jeff Paluk | p | 21 | 6-4 | 214 | R | R | A+ | | Saginaw Valley State University | |
| 30 | 832 | June-Reg | Eric Stuckenschneider | OF | 22 | 6-0 | 190 | R | R | AAA | | University of Central Missouri | |
| 31 | 860 | June-Reg | Michael Wood | C | 18 | 6-4 | 210 | R | R | - | | San Clemente (San Clemente,CA) | |
| 32 | 888 | June-Reg | Brian Majeski | OF | 22 | 6-0 | 180 | R | R | A+ | | University of Connecticut | |
| 33 | 916 | June-Reg | Chip Sell | Of | 23 | 6-2 | 205 | L | R | AAA | | University of the Pacific | |
| 34 | 944 | June-Reg | Kevin Faircloth | SS | 21 | 6-2 | 170 | R | R | A+ | | North Carolina State University | |
| 35 | 972 | June-Reg | Robert Meyer | 2B | 19 | 5-11 | 170 | R | R | A- | | Kirkwood Community College | |
| 36 | 1000 | June-Reg | Ryan Sowards | 3B | 20 | 6-0 | 180 | L | R | A+ | | Walla Walla Community College | |
| 37 | 1028 | June-Reg | Leonardo Matos | p | | | | | | - | | | |
| 38 | 1056** | June-Reg | Eric Byrnes | Of | 18 | 6-2 | 205 | R | R | MLB | 2000-2009 | St. Francis (Mountain View,CA) | |
| 39 | 1084 | June-Reg | Kirby Drube | Of-p | | | | | | - | | Campbell County (Gillette,WY) | |
| 40 | 1111** | June-Reg | Aaron Miller | p | 17 | 6-3 | 235 | R | L | A | | Middletown (Middletown,DE) | |
| 41 | 1137 | June-Reg | Jeff Bramlett | IB | 18 | 6-1 | 198 | R | R | A+ | | Bradley Central (Cleveland,TN) | |
| 42 | 1163 | June-Reg | Ryan Roskowski | 3B | | | | | | - | | Clovis West (Fresno,CA) | |
| 43 | 1189 | June-Reg | Mark Shephard | p | | | | | | Ind | | Strathroy (Strathroy,ON) | |
| 44 | 1215** | June-Reg | Jermaine Clark | SS-2B | 17 | 5-10 | 175 | B | R | MLB | 2001-2005 | Wood (Vacaville,CA) | |
| 45 | 1241** | June-Reg | Brad Block | p | | | | | | - | | Portage Central (Portage,MI) | |
| 46 | 1265** | June-Reg | Chuck Koone | of | 18 | 6-0 | 175 | B | R | A+ | | McDowell (Marion,NC) | |
| 47 | 1288 | June-Reg | Keith Graffagnini | of | | | | | | Rookie | | De La Salle (New Orleans,LA) | |
| 48 | 1309 | June-Reg | Marc Charbonneau | p | 18 | 6-3 | 180 | L | R | A | | | |
| 49 | 1329 | June-Reg | David Sloan | C | | | | | | - | | York (Elmhurst,IL) | |
| 50 | 1349** | June-Reg | Jim Parque | p | 18 | 5-11 | 165 | L | L | MLB | 1998-2003 | Crescenta Valley (La Crescenta,CA) | |
| 51 | 1369 | June-Reg | Elias Tapia | p | 18 | 6-2 | 190 | R | R | A+ | | | |
| 52 | 1389 | June-Reg | Clint Lawrence | p | 17 | 6-4 | 200 | L | L | AA | | White Oaks (Oakville,ON) | |
| 53 | 1408 | June-Reg | Justin Alchley | p | | | | | | - | | Texas A&M University | |
| 54 | 1427 | June-Reg | Frank Hinojosa | C | | | | | | - | | Ayala (Chino Hills,CA) | |
| 55 | 1444 | June-Reg | Thomas Cody | C | | | | | | - | | Lower Columbia Community College | |
| 56 | 1460 | June-Reg | Adam Kiehl | of | | | | | | - | | Appleton East (Appleton,WI) | |
| 57 | 1476 | June-Reg | Tracy Johnson | of | | | | | | - | | Glendale Community College | |
| 58 | 1492** | June-Reg | Hector Esparza | 3B | | | | | | - | | Independence (San Jose,CA) | |
| 59 | 1507 | June-Reg | Anthony Cellers | of | | | | | | - | | Seminole Community College | |
| 60 | 1520 | June-Reg | Jaime Decker | of | | | | | | - | | Fort Madison (Fort Madison,IA) | |
| 61 | 1533 | June-Reg | Luke Quaccia | 1B | 19 | 6-6 | 220 | L | R | A+ | | Modesto Junior College | |
| 62 | 1545 | June-Reg | Josh Osborn | p | | | | | | Ind | | Butte College | |
| 63 | 1557 | June-Reg | Joel Manfredi | 3B | 18 | 6-2 | 205 | R | R | A+ | | Lincoln (Stockton,CA) | |
| 64 | 1569** | June-Reg | Brandon Bowe | p | 18 | 6-3 | 215 | R | R | AA | | San Joaquin Delta College | |
| 65 | 1580 | June-Reg | Calvin Tanton | of | | | | | | - | | Strathmore (Strathmore,AL) | |
| 66 | 1589** | June-Reg | Jesse Zepeda | SS | 20 | 5-10 | 165 | B | R | A | | Cuesta College | |
| 67 | 1598 | June-Reg | Eric Boisjoly | SS | | | | | | - | | | |
| 68 | 1607 | June-Reg | Lance Backowski | 2B | 19 | 6-0 | 180 | R | R | A+ | | Fresno City College | |
| 69 | 1616 | June-Reg | Jaime Malave | 1B | 19 | 6-0 | 215 | R | R | AAA | - | Southeastern Illinois College | |
| 70 | 1624** | June-Reg | Cordell Farley | of | 21 | 6-0 | 185 | R | R | AA | | Louisburg College | |
| 71 | 1632 | June-Reg | Greg Morrison | of | 18 | 6-1 | 215 | L | L | A+ | | | |
| 72 | 1640 | June-Reg | Shawn Painter | of | | | | | | - | | John Abbott College | |
| 73 | 1647** | June-Reg | Chris Vollaro | p | | | | | | Ind | | Oak Ridge (Conroe,TX) | |
| 74 | 1654 | June-Reg | Jeremy Meccage | p | | | | | | - | | West (Billings,MT) | |
| 75 | 1661 | June-Reg | Otis Jasper | p | | | | | | - | | Quesnel (Quesnel,BC) | |
| 76 | 1667 | June-Reg | Justin Elsey | of | 17 | | | | | College | | Casa Grande (Petaluma,CA) | |
| 77 | 1671 | June-Reg | Ovidio Zepeda | of | | | | | | - | | King (Corpus Christi,TX) | |