| 1 | 18 | June-Reg | Cade Gaspar | P | 20 | 6-3 | 175 | R | R | A+ | | Pepperdine University | $825,000 |
| 2 | 52 | June-Reg | Mike Darr | OF | 18 | 6-3 | 205 | L | R | MLB | 1999-2001 | Corona (Corona,CA) | $225,000 |
| 3 | 81 | June-Reg | Greg Whiteman | P | 21 | 6-2 | 200 | L | L | AA | | James Madison University | |
| 4 | 109 | June-Reg | Trad Sobik | P | 18 | 6-2 | 175 | R | R | A+ | | Central Catholic (Clearwater,FL) | |
| 5 | 137 | June-Reg | Keith Smith | OF | 18 | 6-0 | 185 | R | R | A | | Newbury Park (Newbury Park,CA) | |
| 6 | 165 | June-Reg | David Kauflin | P | 18 | 6-4 | 230 | R | R | A- | | Chippewa Valley (Clinton Township,MI) | |
| 7 | 193 | June-Reg | Neil Garcia | C | 21 | 6-0 | 206 | B | R | AAA | | University of Nevada | |
| 8 | 221 | June-Reg | Ryan Balfe | SS | 18 | 6-1 | 180 | B | R | AAA | | Cornwall Central (New Windsor,NY) | |
| 9 | 249 | June-Reg | Darryl Monroe | OF | | | | | | A | | University of Kansas | |
| 10 | 277** | June-Reg | Ryan Kjos | P | 21 | 6-5 | 217 | R | R | AAA | | University of Texas | |
| 11 | 305 | June-Reg | Bubba Trammell | OF | 22 | 6-2 | 220 | R | R | MLB | 1997-2003 | University of Tennessee | |
| 12 | 333 | June-Reg | Michael Bajda | p | | | | | | A | | Sacred Heart University | |
| 13 | 361 | June-Reg | Chad Stevenson | C | 18 | 6-4 | 215 | R | R | A+ | | Green Valley (Henderson,NV) | |
| 14 | 389 | June-Reg | Matt King | p | | | | | | - | | Start (Toledo,OH) | |
| 15 | 417 | June-Reg | Daryle Ward | 1B | 19 | 6-2 | 230 | L | L | MLB | 1998-2008 | Santiago Canyon College | |
| 16 | 445** | June-Reg | Scott Winchester | p | 21 | 6-2 | 210 | R | R | MLB | 1997-2001 | Clemson University | |
| 17 | 473 | June-Reg | Jason Jordan | p | 21 | 6-3 | 220 | R | R | A+ | | Wichita State University | |
| 18 | 501 | June-Reg | Rob Hauswald | SS-2B | | | | | | - | | Lafayette (Lexington,KY) | |
| 19 | 529 | June-Reg | Kirk Hagge | SS | 18 | 6-4 | 200 | B | R | Rookie | | Crescenta Valley (La Crescenta,CA) | |
| 20 | 557 | June-Reg | Mac White | OF | | | | | | - | | University of South Carolina | |
| 21 | 585 | June-Reg | Joshua Farrow | p | | | | | | - | | Dadeville (Dadeville,AL) | |
| 22 | 613 | June-Reg | Robert Balint | C | 20 | 6-1 | 189 | R | R | A | | Valencia Community College | |
| 23 | 641 | June-Reg | Javier Cardona | C | 18 | 6-1 | 185 | R | R | MLB | 2000-2002 | Lake Land College | |
| 24 | 669** | June-Reg | Erik Desrosiers | p | 19 | 6-4 | 210 | R | R | A+ | | Mesa Community College | |
| 25 | 697 | June-Reg | Greg Romo | p | 19 | 6-2 | 165 | L | R | AA | | Bakersfield College | |
| 26 | 725** | June-Reg | Brian Winders | p | | 6-4 | 205 | R | R | A- | | Louisiana State University | |
| 27 | 753 | June-Reg | Chris Newton | p | | | | | | A | | University of Michigan | |
| 28 | 781 | June-Reg | Dave Roberts | OF | 22 | 5-10 | 175 | L | L | MLB | 1999-2008 | UCLA | |
| 29 | 809 | June-Reg | Jamie Borel | OF | | | | | | A+ | | East Carolina University | |
| 30 | 837 | June-Reg | Jeff Fryar | p | | | | | | - | | Fort Gibson (Fort Gibson,OK) | |
| 31 | 865 | June-Reg | Rivers Mitchell | OF | | | | | | A- | | State College of Florida, Manatee-Sarasota | |
| 32 | 893 | June-Reg | Steven Elkins | p | | | | | | - | | Chesterton (Chesterton,IN) | |
| 33 | 921 | June-Reg | Brent Stentz | p | 18 | 6-5 | 225 | R | R | AAA | | Pasco-Hernando Community College | |
| 34 | 949 | June-Reg | Mark Persails | p | 18 | 6-3 | 190 | R | R | AAA | | Millington (Vassar,MI) | |
| 35 | 977 | June-Reg | Bryan Jones | SS | 19 | 6-0 | 185 | R | R | Ind | | Plantation (Plantation,FL) | |
| 36 | 1005 | June-Reg | K.J. Jacobson | p | 23 | 6-3 | 205 | R | R | A+ | | Gonzaga University | |
| 37 | 1033** | June-Reg | Brent Sagedahl | p | | | | | | A- | | Carthage College | |
| 38 | 1061 | June-Reg | Matt Ruess | p | | | | | | A- | | Iowa State University | |
| 39 | 1089 | June-Reg | Jacob Freeman | 3B | 19 | | | | | - | | Bakersfield College | |
| 40 | 1116 | June-Reg | John Hayduk | p | | | | | | - | | | |
| 41 | 1142** | June-Reg | Kiko Calero | p | 19 | 6-1 | 170 | R | R | MLB | 2003-2009 | Miami-Dade South Community College | |
| 42 | 1168** | June-Reg | Derek Kopacz | of | 19 | 5-10 | 195 | R | R | A | | Joliet Junior College | |
| 43 | 1194 | June-Reg | Sean Freeman | 1B | | | | | | AA | | Kent State University | |
| 44 | 1220** | June-Reg | Brian Fuller | C | | | | | | A+ | | Northwestern University | |
| 45 | 1246** | June-Reg | Manny Lutz | 3B | 18 | 6-2 | 230 | L | R | AA | | Monte Vista (Spring Valley,CA) | |
| 46 | 1270 | June-Reg | DeAndre Cooper | of | | | | | | - | | St. Francis Cabrini (Detroit,MI) | |
| 47 | 1293 | June-Reg | Andy Kruger | of | 21 | 5-11 | 180 | L | L | A+ | | Central Michigan University | |
| 48 | 1314 | June-Reg | Eric Dinyar | p | 20 | 6-6 | 210 | R | R | A+ | | University of Pittsburgh | |
| 49 | 1334 | June-Reg | Michael Goralczyk | p | | | | | | - | | Lake Michigan College | |
| 50 | 1354 | June-Reg | Mike Martin | 2B | | | | | | A+ | | Boston College | |
| 51 | 1374 | June-Reg | Dale Dolejsi | p | | | | | | Rookie | | University of the Pacific | |
| 52 | 1394 | June-Reg | John White | of | | | | | | A | | Gulf Coast Community College | |
| 53 | 1413 | June-Reg | Derek Dixon | p | 18 | 6-3 | 195 | R | R | Rookie | | Chickasha (Chickasha,OK) | |
| 54 | 1432** | June-Reg | Aaron Anthony | 3B | | | | | | - | | Winder-Barrow (Winder,GA) | |
| 55 | 1449 | June-Reg | Dan Driskill | p | | | | | | A- | | Newman University | |
| 56 | 1465 | June-Reg | Michael Kujawa | p | | | | | | - | | Bowsher (Toledo,OH) | |
| 57 | 1481 | June-Reg | Joe Eisen | of | | | | | | - | | Northmont (Clayton,OH) | |
| 58 | 1497 | June-Reg | Dwayne Landry | SS | | | | | | - | | Gulf Coast Community College | |
| 59 | 1512 | June-Reg | Rodney Archer | of | | | | | | - | | Allan Hancock College | |
| 60 | 1525 | June-Reg | Joel Hillebrand | p | | | | | | - | | Henry Ford Community College | |
| 61 | 1538 | June-Reg | John Perry | p | | | | | | - | | Brazoswood (Clute,TX) | |
| 62 | 1550 | June-Reg | Stephen Berger | of | | | | | | - | | Clay (Oregon,OH) | |
| 63 | 1562 | June-Reg | Nole Elizer | C | | | | | | - | | Seminole Community College | |
| 64 | 1574 | June-Reg | Steven Williams | p | | | | | | - | | Seaholm (Birmingham,MI) | |
| 65 | 1585 | June-Reg | Chris Champanois | of | | | | | | - | | Henry Ford Community College | |
| 66 | 1594 | June-Reg | Reid Beucler | p | | | | | | - | | Georgetown Prep (North Bethesda,MD) | |
| 67 | 1603** | June-Reg | Brian Rios | SS | 19 | 6-3 | 190 | R | R | AAA | | Riverside Community College | |
| 68 | 1612 | June-Reg | Luis Rodriguez | of | 20 | 5-9 | 180 | R | R | AAA | | Riverside Community College | |