| 1 | 7 | June-Reg | Trot Nixon | OF | 19 | 6-2 | 200 | L | L | MLB | 1996-2008 | New Hanover (Wilmington,NC) | $890,000 |
| 2 | 49 | June-Reg | Jeff Suppan | P | 18 | 6-2 | 210 | R | R | MLB | 1995-2009 | Crespi Carmelite (Encino,CA) | $190,000 |
| 3 | 79 | June-Reg | Ryan McGuire | 1B | 21 | 6-0 | 215 | L | L | MLB | 1997-2002 | UCLA | |
| 4 | 107 | June-Reg | Shawn Senior | P | 21 | 6-1 | 195 | L | L | AAA | | North Carolina State University | |
| 5 | 135 | June-Reg | Kevin Clark | 3B | 20 | 6-1 | 200 | R | R | AA | | Cypress College | |
| 6 | 163 | June-Reg | Pete Munro | P | 18 | 6-3 | 210 | R | R | MLB | 1999-2004 | Cardozo (Flushing,NY) | |
| 7 | 191 | June-Reg | Dave Gibralter | 3B | 18 | 6-2 | 220 | R | R | AAA | | Duncanville (Duncanville,TX) | |
| 8 | 219** | June-Reg | Sean DePaula | P | 19 | 6-4 | 215 | R | R | MLB | 1999-2002 | Cardinal Cushing Central (Boston,MA) | |
| 9 | 247 | June-Reg | Dean Peterson | P | 20 | 6-3 | 200 | R | R | AAA | | Allegheny College | |
| 10 | 275 | June-Reg | Lou Merloni | SS | 22 | 5-10 | 195 | R | R | MLB | 1998-2006 | Providence College | |
| 11 | 303 | June-Reg | Kurt Bogott | P | 20 | 6-4 | 195 | L | L | AAA | | Saint Xavier University | |
| 12 | 331** | June-Reg | Pat Murphy | 2B | 21 | 5-10 | 160 | L | R | AA | | University of South Alabama | |
| 13 | 359 | June-Reg | Wilfredo Rivera | OF | 19 | 6-2 | 200 | R | R | A | | | |
| 14 | 387 | June-Reg | David Smith | SS | 21 | 5-10 | 160 | R | R | A+ | | Le Moyne College | |
| 15 | 415 | June-Reg | Jacob Cook | p | 18 | 6-6 | 220 | R | R | A+ | | Greenville (Greenville,OH) | |
| 16 | 443 | June-Reg | Andy Abad | OF | 20 | 6-1 | 184 | L | L | MLB | 2001-2006 | Middle Georgia College | |
| 17 | 471 | June-Reg | Greg Patton | SS | 21 | 6-3 | 195 | R | R | AA | | George Washington University | |
| 18 | 499** | June-Reg | Keith McDonald | OF | 20 | 6-2 | 215 | R | R | MLB | 2000-2001 | Cypress College | |
| 19 | 527 | June-Reg | Courtney Arrollado | SS | 18 | 6-1 | 190 | R | R | A | | Valhalla (El Cajon,CA) | |
| 20 | 555 | June-Reg | Allan Westfall | p | 18 | 5-11 | 195 | R | R | AA | | Deltona (Deltona,FL) | |
| 21 | 583 | June-Reg | John Graham | OF | 22 | 5-10 | 170 | L | L | A+ | | University of Massachusetts | |
| 22 | 611 | June-Reg | Craig Phillip | p | 20 | 6-3 | 180 | R | R | Rookie | | Aurora University | |
| 23 | 639 | June-Reg | Mark Ballard | p | | | | | | - | | University of Maine | |
| 24 | 667 | June-Reg | Greg Kennedy | p | 21 | 6-1 | 180 | L | L | A+ | | University of Southern Mississippi | |
| 25 | 695 | June-Reg | Shayne Bennett | p | 21 | 6-5 | 220 | R | R | MLB | 1997-1999 | College of DuPage | |
| 26 | 723 | June-Reg | Christian McCarter | OF | | | | | | - | | University of Louisiana-Monroe | |
| 27 | 751 | June-Reg | Scotty Hartfield | OF | | | | | | - | | Hattiesburg (Hattiesburg,MS) | |
| 28 | 779 | June-Reg | Steve Hayward | p | 22 | 6-2 | 185 | R | R | A+ | | Seton Hall University | |
| 29 | 807 | June-Reg | Jeff Belcher | OF | | | | | | - | | Calhoun Community College | |
| 30 | 835 | June-Reg | Jim Larkin | 3B | 22 | 6-1 | 195 | R | R | A+ | | College of the Holy Cross | |
| 31 | 863 | June-Reg | Aaron Fuller | 2B | 21 | 5-10 | 170 | B | R | AAA | | University of California | |
| 32 | 891 | June-Reg | Nathan Tebbs | 2B | 20 | 5-10 | 170 | B | R | AAA | | College of Southern Idaho | |
| 33 | 919 | June-Reg | Ricky Rodriguez | SS | | | | | | - | | | |
| 34 | 947 | June-Reg | James Fernandes | p | 21 | 6-5 | 240 | R | R | A+ | | Brandeis University | |
| 35 | 975 | June-Reg | John Walker | 2B | 21 | 5-9 | 170 | L | R | A+ | | Grand Rapids Community College | |
| 36 | 1003 | June-Reg | Gavin Jackson | SS | 19 | 5-10 | 170 | R | R | AAA | | Chipola College | |
| 37 | 1031 | June-Reg | Mark Dewalt | p | 18 | 6-6 | 215 | R | R | Rookie | | Upper Arlington (Upper Arlington,OH) | |
| 38 | 1059** | June-Reg | Wayne Slater | Of | | | | | | A- | | Roosevelt (Brooklyn,NY) | |
| 39 | 1087 | June-Reg | Tony Brannon | 2B | | | | | | A- | | Johnstown-Monroe (Johnstown,OH) | |
| 40 | 1115 | June-Reg | Patrick McLendon | C | | | | | | - | | Lee (Baytown,TX) | |
| 41 | 1143** | June-Reg | Danny Ardoin | C | 18 | 6-0 | 205 | R | R | MLB | 2000-2008 | Texarkana College | |
| 42 | 1171** | June-Reg | Chad Helmer | p | 17 | 6-4 | 195 | R | R | AA | | East Bay (Gibsonton,FL) | |
| 43 | 1198 | June-Reg | Eric Ford | of | 21 | 6-2 | 185 | R | R | A- | | Jacksonville State University | |
| 44 | 1225 | June-Reg | Kenneth Davis | p | | | | | | - | | Chipola College | |
| 45 | 1251 | June-Reg | Joe Hayward | of | 22 | 6-1 | 195 | L | R | A+ | | Boston College | |
| 46 | 1276 | June-Reg | Scott Brewer | p | | | | | | - | | Southern Union State Community College | |
| 47 | 1300 | June-Reg | Alphonso Johnson | SS | 16 | 6-1 | 185 | R | R | Ind | | Simmons School (Hollandale,MS) | |
| 48 | 1323 | June-Reg | Ricky Joe Redd | of | | | | | | - | | Mississippi State University | |
| 49 | 1347** | June-Reg | Mike Davis | p | 17 | 5-11 | 180 | R | R | A- | | Northwest Whitfield (Tunnel Hill,GA) | |
| 50 | 1370 | June-Reg | Chris Ciraulo | C | | | | | | - | | | |