| 1 | 4 | June-Reg | Wayne Gomes | P | 20 | 6-2 | 227 | R | R | MLB | 1997-2002 | Old Dominion University | $750,000 |
| 2 | 46 | June-Reg | Scott Rolen | 3B | 18 | 6-4 | 226 | R | R | MLB | 1996-2009 | Jasper (Jasper,IN) | $250,000 |
| 3 | 76 | June-Reg | Josh Watts | OF | | | | | | A+ | | Ironwood (Glendale,AZ) | |
| 4 | 104 | June-Reg | Jeffrey Key | OF | 18 | 6-1 | 210 | L | R | AA | | Newton (Covington,GA) | |
| 5 | 132 | June-Reg | Thomas Franek | P | | | | | | A+ | | Mesa State College | |
| 6 | 160** | June-Reg | Blair Fowler | P | 18 | 6-2 | 185 | R | R | A+ | | Everett (Everett,WA) | |
| 7 | 188 | June-Reg | Scott Sladovnik | OF | | | | | | - | | Westside (Omaha,NE) | |
| 8 | 216 | June-Reg | Bo Hamilton | P | | | | | | A- | | Cleveland (Cleveland,TX) | |
| 9 | 244 | June-Reg | Nelson Metheney | P | 22 | 6-3 | 205 | R | R | AA | | The University of Virginia's College at Wise | |
| 10 | 272 | June-Reg | Silvio Censale | P | 21 | 6-2 | 195 | L | L | AA | | University of Miami | |
| 11 | 300** | June-Reg | Jarrod Mays | P | 18 | 6-4 | 190 | R | R | AA | | El Dorado Springs (El Dorado,MO) | |
| 12 | 328 | June-Reg | Chris Mayfield | OF | | | | | | A- | | McNeese State University | |
| 13 | 356 | June-Reg | Brian Costello | OF | 18 | 6-1 | 195 | R | R | AA | | Dr. Phillips (Orlando,FL) | |
| 14 | 384 | June-Reg | Rich Hunter | p | 18 | 6-1 | 185 | R | R | MLB | 1996-1996 | The Linfield School (Temecula,CA) | |
| 15 | 412 | June-Reg | Tom Danulevith | p | | 6-4 | 205 | | L | - | | St. John's University | |
| 16 | 440 | June-Reg | Doug Angeli | SS | 22 | 5-10 | 180 | R | R | AAA | | University of New Orleans | |
| 17 | 468 | June-Reg | Eric Ekdahi | SS | | | | | | - | | Pepperdine University | |
| 18 | 496 | June-Reg | Mark Gardener | p | | | | | | - | | Fountain Valley (Fountain Valley,CA) | |
| 19 | 524 | June-Reg | Jeff Gyselman | OF | | | | | | AA | | Portland State University | |
| 20 | 552 | June-Reg | Charles Tinsley | OF | 18 | 6-2 | 195 | R | R | Rookie | | Cumberland (Cumberland,KY) | |
| 21 | 580 | June-Reg | Nate Rodriquez | SS | | | | | | - | | Cal State Fullerton | |
| 22 | 608 | June-Reg | Andrew Szarko | p | | | | | | Rookie | | University of Richmond | |
| 23 | 636 | June-Reg | Cliff Foster | p | 21 | 6-0 | 180 | R | R | A | | University of Richmond | |
| 24 | 664 | June-Reg | Tyrone Swan | p | 24 | 6-7 | 195 | R | R | A+ | | University of La Verne | |
| 25 | 692 | June-Reg | Matthew Brainard | C-3B | 22 | 6-1 | 205 | R | R | A | | Wilmington University | |
| 26 | 720 | June-Reg | Derek Stingley | OF | | | | | | A | | Triton College | |
| 27 | 748 | June-Reg | Dave Doster | 2B | 22 | 5-10 | 185 | R | R | MLB | 1996-1999 | Indiana State University | |
| 28 | 776 | June-Reg | Neal Murphy | C | | | | | | A- | | Iona College | |
| 29 | 804** | June-Reg | Brian O'Connor | p | 16 | 6-2 | 175 | L | L | MLB | 2000-2000 | Creighton University | |
| 30 | 832 | June-Reg | Mike Muncy | SS | | 6-0 | 185 | R | R | - | | Ventura College | |
| 31 | 860 | June-Reg | Danton Pierre-Louis | 1B | 19 | 6-1 | 200 | L | L | Rookie | | Dwight (New York,NY) | |
| 32 | 888 | June-Reg | Joey Madden | OF | 22 | 6-4 | 190 | R | R | A | | Cal State East Bay | |
| 33 | 916 | June-Reg | Kevin Sefcik | SS | 22 | 5-10 | 184 | R | R | MLB | 1995-2001 | Saint Xavier University | |
| 34 | 944 | June-Reg | Shawn Fouch | p | | | | | | - | | Virginia (Bristol,VA) | |
| 35 | 972 | June-Reg | Mike Boucher | p | 20 | 6-4 | 195 | R | R | - | - | Saddleback College | |
| 36 | 1000 | June-Reg | Larry Karpinski | p | | | | | | - | | Eisenhower (Rialto,CA) | |
| 37 | 1028 | June-Reg | Darin Wood | C | | | | | | - | | Redwood (Visalia,CA) | |
| 38 | 1056** | June-Reg | Jake Esteves | p | 17 | 6-1 | 190 | R | R | AA | | Placer (Auburn,CA) | |
| 39 | 1084 | June-Reg | Barry Fitzgerald | C | | | | | | Rookie | | West Hills (Santee,CA) | |
| 40 | 1112** | June-Reg | Karl Chatman | of | 18 | 6-1 | 190 | R | R | A+ | | Nacogdoches (Nacogdoches,TX) | |
| 41 | 1140 | June-Reg | Michael Neal | p | | | | | | - | | Seymour (Seymour,TN) | |
| 42 | 1168 | June-Reg | Daniel Held | C | 22 | 6-1 | 200 | R | R | AAA | | Waukesha County (Neosho,WI) | |
