| 2 | 55** | June-Reg | Todd Helton | OF | 18 | 6-2 | 206 | L | L | MLB | 1997-2009 | Knoxville Central (Knoxville,TN) | |
| 3 | 85 | June-Reg | Jared Baker | P | 21 | 6-5 | 220 | L | R | AA | | University of South Carolina | |
| 4 | 113** | June-Reg | Brett Laxton | P | 18 | 6-2 | 205 | L | R | MLB | 1999-2000 | Audubon (Audubon,NJ) | |
| 5 | 141 | June-Reg | Jim Baron | jP | 18 | 6-3 | 230 | L | L | AAA | | Humble (Humble,TX) | |
| 6 | 169 | June-Reg | Brad Gennaro | OF | 20 | 6-1 | 170 | L | L | AA | | San Diego State University | |
| 7 | 197 | June-Reg | Tom Kindler | P | | | | | | A | | Kent State University | |
| 8 | 225** | June-Reg | Rich Lawrence | SS | 17 | 6-0 | 185 | R | R | Rookie | | Barron Collier (Naples,FL) | |
| 9 | 253 | June-Reg | Todd Erdos | P | 18 | 6-1 | 190 | R | R | MLB | 1997-2001 | Meadville (Meadville,PA) | |
| 10 | 281 | June-Reg | Ricky Talbott | 3B | | | | | | Rookie | | Northview (Covina,CA) | |
| 11 | 309 | June-Reg | John Fantauzzi | 1B | 20 | 6-6 | 220 | L | L | A+ | | Florida International University | |
| 12 | 337 | June-Reg | Troy Gills | SS | | | | | | - | | Curtis (University Place,WA) | |
| 13 | 365 | June-Reg | Aaron Rogues | OF | | | | | | Rookie | | Canyon Springs (Moreno Valley,CA) | |
| 14 | 393 | June-Reg | Marcus McCoy | OF | | | | | | Rookie | | Meridian (Meridian,MS) | |
| 15 | 421 | June-Reg | Brian McLain | p | | | | | | A- | | Mountain View (Vancouver,WA) | |
| 16 | 449 | June-Reg | Luis Arroyo | p | 18 | 6-0 | 170 | L | L | AAA | | | |
| 17 | 477 | June-Reg | Sean Drinkwater | SS | 21 | 6-3 | 195 | R | R | AAA | | North Carolina State University | |
| 18 | 505 | June-Reg | Bobby Bonds | OF | 22 | 6-4 | 180 | R | R | AAA | | Canada College | |
| 19 | 533 | June-Reg | Chris Murphy | p | | | | | | - | | Elon University | |
| 20 | 561** | June-Reg | Brent Bearden | p | | | | | | A- | | Texarkana College | |
| 21 | 589 | June-Reg | Joseph Bowden | SS | | | | | | Rookie | | Simeon (Chicago,IL) | |
| 22 | 617 | June-Reg | Gabriel Martinez | C | | | | | | Rookie | | Odessa College | |
| 23 | 645 | June-Reg | Ken Grzelaczyk | p | 21 | 6-4 | 220 | R | R | A+ | | St. John's University | |
| 24 | 673** | June-Reg | Geoff Jenkins | 3B | 17 | 6-1 | 204 | L | R | MLB | 1998-2008 | Cordova (Rancho Cordova,CA) | |
| 25 | 701** | June-Reg | Joe Jumonville | p | | | | | | A+ | | Bishop Noll (Hammond,IN) | |
| 26 | 729 | June-Reg | Rico Lagattuta | p | 18 | 6-2 | 205 | L | L | A+ | | Westlake (Westlake Village,CA) | |
| 27 | 757 | June-Reg | Jeff Jones | p | 18 | 6-6 | 222 | B | R | A- | | Vincent Massey (Windsor,ON) | |
| 28 | 785 | June-Reg | Mark Davis | p | | | | | | - | | Sterling (Baytown,TX) | |
| 29 | 813 | June-Reg | Zaven Luckett | OF | | | | | | Rookie | | Westbury (Houston,TX) | |
| 30 | 841 | June-Reg | Erick Corps | SS | 17 | 6-0 | 180 | B | R | AA | | | |
| 31 | 869** | June-Reg | Jeff Gyselman | OF | | | | | | AA | | Portland State University | |
| 32 | 897 | June-Reg | Bill Robbs | OF | | | | | | A+ | | Grand Canyon University | |
| 33 | 925 | June-Reg | Michael Sanders | Of | 18 | 6-3 | 195 | R | R | Rookie | | Monroe (Bronx,NY) | |
| 34 | 953 | June-Reg | Martin Winchester | p | | | | | | A+ | | Long Beach City College | |
| 35 | 981 | June-Reg | Mike Stadler | C | | | | | | A- | | El Cajon Valley (El Cajon,CA) | |
| 36 | 1009** | June-Reg | Todd Bartels | p | 18 | 6-4 | 215 | R | R | A | | Millard North (Omaha,NE) | |
| 37 | 1037** | June-Reg | Mark Bellhorn | SS | 17 | 6-1 | 214 | B | R | MLB | 1997-2007 | Oviedo (Oviedo,FL) | |
| 38 | 1065 | June-Reg | Robert Deleon | 2B | 21 | 5-10 | 188 | R | R | AAA | | University of Texas | |
| 39 | 1093** | June-Reg | Justin Long | Of-SS | 20 | 6-0 | 180 | R | R | A+ | | Claremont (Claremont,CA) | |
| 40 | 1121 | June-Reg | Scott Singleton | p | 17 | 6-6 | 195 | R | R | A- | | Westlake (Westlake Village,CA) | |
| 41 | 1149 | June-Reg | Britton Scheibe | of | 20 | 6-3 | 215 | B | R | A- | | Mira Costa College | |
| 42 | 1177 | June-Reg | Brett Malekovic | 1B | | | | | | Rookie | | Stagg (Palos Hills,IL) | |
| 43 | 1205 | June-Reg | Hector Fargas | p | 18 | 6-1 | 205 | R | R | A+ | | | |
| 44 | 1233 | June-Reg | Karl Goins | C | | | | | | - | | Mira Mesa (San Diego,CA) | |
| 45 | 1261 | June-Reg | Kevin Minchk | 1B | | | | | | A | | University of Iowa | |
| 46 | 1289 | June-Reg | Marcus Willis | p | | | | | | Rookie | | WT White (Dallas,TX) | |
| 47 | 1317 | June-Reg | Adam Frost | p | | | | | | - | | Ocean Springs (Ocean Springs,MS) | |
| 48 | 1345 | June-Reg | Robert Myers | p | 15 | 6-1 | 185 | R | R | Rookie | | Long Beach City College | |
| 49 | 1373 | June-Reg | Matthew Goebel | of | | | | | | Rookie | | Royal (Simi Valley,CA) | |
| 50 | 1401** | June-Reg | Shane Gunderson | C | 18 | 6-0 | 216 | R | R | AA | | | |