| 1 | 6 | June-Reg | Derek Jeter | SS | 18 | 6-3 | 195 | R | R | MLB | 1995-2009 | Kalamazoo Central (Kalamazoo,MI) | $800,000 |
| 4 | 102 | June-Reg | Mike Buddie | P | 21 | 6-3 | 210 | R | R | MLB | 1998-2002 | Wake Forest University | |
| 5 | 130 | June-Reg | Don Leshnock | C | 21 | 6-4 | 220 | L | R | AA | | University of North Carolina | |
| 6 | 158 | June-Reg | Ray Suplee | OF | 21 | 6-3 | 200 | R | R | A+ | | University of Georgia | |
| 7 | 186 | June-Reg | Carlton Fleming | 2B | 20 | 5-11 | 175 | B | R | AAA | | Georgia Tech | |
| 8 | 214 | June-Reg | Matt Luke | OF | 21 | 6-5 | 220 | L | L | MLB | 1996-1999 | University of California | |
| 9 | 242 | June-Reg | Ryan Karp | P | 22 | 6-4 | 220 | L | L | MLB | 1995-1997 | Florida International University | |
| 10 | 270 | June-Reg | Robert Hinds | 2B | 21 | 6-0 | 185 | R | R | AAA | | UCLA | |
| 11 | 298 | June-Reg | Mike Gordon | P | 19 | 6-2 | 195 | L | R | AA | | Shanks (Quincy,FL) | |
| 12 | 326 | June-Reg | Kraig Hawkins | OF | 20 | 6-2 | 170 | R | R | AAA | | University of South Alabama | |
| 13 | 354 | June-Reg | Jim Thomforde | p | 21 | 6-6 | 205 | R | R | A+ | | Trinity College | |
| 14 | 382 | June-Reg | Kent Wallace | p | 21 | 6-3 | 195 | L | R | AAA | | Murray State University | |
| 15 | 410 | June-Reg | Jeff Antolick | p | 21 | 6-6 | 205 | R | R | AA | | Lafayette College | |
| 16 | 438 | June-Reg | Blaise Kozeniewski | SS | 22 | 6-3 | 185 | R | R | AA | | University of Georgia | |
| 17 | 466 | June-Reg | Bill Underwood | p | 21 | 6-2 | 195 | R | R | A | | Kent State University | |
| 18 | 494 | June-Reg | Ernie Yaroshuk | OF | 21 | 6-1 | 190 | L | R | A- | | Stetson University | |
| 19 | 522 | June-Reg | Gordon Sanchez | OF | 21 | 6-2 | 180 | L | R | AAA | | Long Beach State University | |
| 20 | 550 | June-Reg | Glenn Detafield | OF | | | | | | - | | Panola College | |
| 21 | 578 | June-Reg | Travion Nelson | OF | | | | | | A- | | South Hills (Covina,CA) | |
| 22 | 606 | June-Reg | Bruce Pool | p | 21 | 6-3 | 190 | R | L | A+ | | University of Texas-Arlington | |
| 23 | 634 | June-Reg | Quivia Samuel | 1B | | | | | | A- | | Washington (Los Angeles,CA) | |
| 24 | 662 | June-Reg | Mike DeJean | p | 21 | 6-2 | 212 | R | R | MLB | 1997-2006 | University of West Alabama | |
| 25 | 690 | June-Reg | Nick Delvecchio | OF | | | | | | AAA | | Harvard University | |
| 26 | 718 | June-Reg | Eric Trice | OF | | 5-10 | 195 | B | R | - | | University of Oregon | |
| 27 | 746 | June-Reg | Francis Fucile | SS | 18 | 6-2 | 205 | R | R | - | | St. Thomas Aquinas (Fort Lauderdale,FL) | |
| 28 | 774 | June-Reg | Chris Ashby | C | 17 | 6-3 | 225 | R | R | AAA | | Spanish River (Boca Raton,FL) | |
| 29 | 802 | June-Reg | Brian McLamb | SS | 19 | 6-3 | 185 | B | R | AA | | Florida Community College | |
| 30 | 830** | June-Reg | Anthony Shelby | p | 18 | 6-3 | 230 | L | L | AAA | | Lockport Township (Lockport,IL) | |
| 31 | 858 | June-Reg | Joshua Gregson | 1B | | | | | | - | | Dale (Dale,OK) | |
| 32 | 886** | June-Reg | Rommel Motley | OF | | | | | | - | | Poly (Riverside,CA) | |
| 33 | 914** | June-Reg | Mike Robbins | p | 18 | 6-1 | 190 | L | L | A+ | | Skyline (Oakland,CA) | |
| 34 | 942 | June-Reg | Greg Dean | p-3B | 18 | 6-2 | 220 | R | R | AA | | Ada (Ada,OK) | |
| 35 | 970 | June-Reg | Drew Pearce | p | 17 | 6-3 | 215 | B | R | - | | St. Francis (Mountain View,CA) | |
| 36 | 998** | June-Reg | Victor Rodriguez | p | 18 | 6-4 | 190 | R | R | A- | | Northwest Florida State College | |
| 37 | 1026 | June-Reg | Vick Brown | SS | 19 | 6-1 | 170 | R | R | AAA | | Northwest Florida State College | |
| 38 | 1054 | June-Reg | R.D. Long | SS | 21 | 6-1 | 183 | B | R | AAA | | University of Houston | |
| 39 | 1082 | June-Reg | Bryan Richardson | Of | | | | | | - | | Lowe (Windsor,ON) | |
| 40 | 1110 | June-Reg | Brad Tayles | p | | | | | | - | | Western Michigan University | |
| 41 | 1138 | June-Reg | Tibor Brown | p | 22 | 6-1 | 190 | L | L | Rookie | | Stetson University | |
| 42 | 1166** | June-Reg | Sean Mcclellan | p | 19 | 6-2 | 215 | R | R | AAA | | Seminole (Seminole,FL) | |
| 43 | 1194 | June-Reg | John Ziegelman | of | | | | | | - | | Placer (Auburn,CA) | |
| 44 | 1222 | June-Reg | Andrew Stenger | of | | | | | | - | | Indian River State College | |
| 45 | 1250** | June-Reg | Dale Brandt | p | | | | | | A- | | Vero Beach (Vero Beach,FL) | |
| 46 | 1278 | June-Reg | Keith Heberling | p | 19 | 6-3 | 200 | L | L | AA | | Indian River State College | |
| 47 | 1306 | June-Reg | Sean Duncan | of | 19 | 6-2 | 195 | L | L | AA | | McLennan Community College | |
| 48 | 1334 | June-Reg | Chris Cumberland | p | 19 | 6-1 | 189 | R | L | Intl | | Pasco-Hernando Community College | |
| 49 | 1362 | June-Reg | Reginald Coleman | of | | | | | | - | | Frankston (Frankston,TX) | |
| 50 | 1390 | June-Reg | Damon Lembi | C-1B | | | | | | - | | College of San Mateo | |