| 1 | 26 | June-Reg | Dan Serafini | P | 18 | 6-1 | 195 | B | L | MLB | 1996-2007 | Junipero Serra (San Mateo,CA) | |
| 2 | 64 | June-Reg | Chad Roper | SS | 18 | 6-1 | 223 | R | R | AA | | Belton-Honea Path (Belton,SC) | |
| 2 | 68 | June-Reg | Tom Knauss | 3B | 18 | 6-2 | 205 | R | R | A+ | | Hersey (Arlington Heights,IL) | |
| 3 | 94 | June-Reg | Gus Gandarillas | P | 20 | 6-1 | 183 | R | R | MLB | 2001-2001 | University of Miami | |
| 4 | 122 | June-Reg | Kevin Pearson | SS | | | | | | A | | | |
| 5 | 150 | June-Reg | Aaron Thatcher | P | | | | | | - | | Mountain Crest (Hyrum,UT) | |
| 6 | 178 | June-Reg | Keith Linebarger | P | 21 | 6-6 | 220 | R | R | AAA | | Columbus State University | |
| 7 | 206 | June-Reg | Armann Brown | OF | 19 | 6-1 | 165 | R | R | AA | | Johnston (Austin,TX) | $70,000 |
| 8 | 234 | June-Reg | Chad Cooley | SS-OF | | 5-11 | 190 | R | R | - | | Barbe (Lake Charles,LA) | |
| 9 | 262 | June-Reg | Rene Lopez | C | | | | | | AAA | | Los Angeles Harbor College | |
| 10 | 290 | June-Reg | Ben Jones | OF | | | | | | A+ | | Alexandria (Alexandria,LA) | |
| 11 | 318 | June-Reg | Anthony Byrd | OF | 21 | 5-11 | 185 | R | R | AA | | Georgia Tech | |
| 12 | 346 | June-Reg | Steve Rosga | SS | | | | | | - | | Cretin-Derham Hall (St. Paul,MN) | |
| 13 | 374 | June-Reg | Dexter McCleon | C | | | | | | College | | Meridian (Meridian,MS) | |
| 14 | 402 | June-Reg | Dan Naulty | p | 22 | 6-6 | 224 | R | R | MLB | 1996-1999 | Cal State Fullerton | |
| 15 | 430 | June-Reg | Todd Taylor | C | 22 | 6-0 | 200 | L | R | - | | Florida Southern College | |
| 16 | 458 | June-Reg | Sean Gavaghan | p | 22 | 6-1 | 194 | R | R | AAA | | University of Richmond | |
| 17 | 486 | June-Reg | Javi DeJesus | p | | | | | | AA | | University of Louisiana at Lafayette | |
| 18 | 514 | June-Reg | Jeff Crick | p | 18 | 6-3 | 180 | R | R | Rookie | | Sandalwood (Jacksonville,FL) | |
| 19 | 542 | June-Reg | Todd Taylor | p | 21 | 5-9 | 157 | L | L | A | | Long Beach State University | |
| 20 | 570 | June-Reg | Ted Corbin | SS | | | | | | AAA | | Clemson University | |
| 21 | 598 | June-Reg | Ken Tirpack | 1B | 22 | 6-0 | 186 | L | R | AA | | Ohio State University | |
| 22 | 626 | June-Reg | Tom Horincewich | SS | 21 | 5-11 | 188 | L | R | A+ | | Pace University | |
| 23 | 654 | June-Reg | Scott Watkins | p | 22 | 6-3 | 180 | L | L | MLB | 1995-1995 | Oklahoma State University | |
| 24 | 682 | June-Reg | Trevor Cobb | p | 18 | 6-2 | 189 | L | L | AA | | Cascade (Everett,WA) | |
| 25 | 710** | June-Reg | Jeff Cermak | 3B | | | | | | Ind | | Riverside-Brookfield (Brookfield,IL) | |
| 26 | 738 | June-Reg | Robert Debrino | p | 18 | 6-2 | 205 | R | R | A+ | | Northern Valley Regional (Demarest,NJ) | |
| 27 | 766 | June-Reg | Andrew Kontorinis | 1B | 22 | 6-0 | 198 | L | R | AA | | University of South Alabama | |
| 28 | 794 | June-Reg | Paul Saccavino | p | 22 | 6-1 | 200 | R | R | AA | | University of Richmond | |
| 29 | 822 | June-Reg | Adrian Gordon | OF | 18 | 6-3 | 231 | R | R | A | | Alexandria (Alexandria,LA) | |
| 30 | 850 | June-Reg | Jason Tatar | p | 17 | 6-0 | 194 | R | R | A+ | | Rantoul (Rantoul,IL) | |
| 31 | 878 | June-Reg | Marc Claus | 2B | | | | | | A+ | | University of North Florida | |
| 32 | 906 | June-Reg | Joe Miller | OF | | | | | | A | | Los Angeles Harbor College | |
| 33 | 934 | June-Reg | Kevin Legault | p | 21 | 6-1 | 185 | R | R | AAA | | Seton Hall University | |
| 34 | 962 | June-Reg | Butch Burrough | p-Of | 21 | 6-1 | 192 | R | R | A+ | | Concordia College | |
| 35 | 990 | June-Reg | Chris Piggott | Of | | | | | | - | | Stevenson (Lincolnshire,IL) | |
| 36 | 1018 | June-Reg | Tim Costic | Of | 21 | 6-2 | 176 | L | L | A | | Fresno State University | |
| 37 | 1046 | June-Reg | Luis Alvarado | p | | | | | | A | | | |
| 38 | 1074** | June-Reg | Gary Matthews | 2B | 17 | 6-3 | 200 | B | R | MLB | 1999-2009 | Granada Hills (Granada Hills,CA) | |
| 39 | 1102 | June-Reg | Chris Tolbert | Of | | | | | | - | | Boll Weevilsnterprise-Ozark Community College | |
| 40 | 1130 | June-Reg | Dwayne Walters | p | | | | | | - | | | |
| 41 | 1158 | June-Reg | George Johnson | SS | | | | | | - | | | |
| 42 | 1186 | June-Reg | Jason Baker | of | 19 | 5-10 | 176 | L | L | AAA | | Motlow State Community College | |
| 43 | 1214 | June-Reg | Brent Nichols | p | | | | | | - | | Clayton Valley (Concord,CA) | |
| 44 | 1242 | June-Reg | Dave Bies | of | | | | | | - | | Como Park (St. Paul,MN) | |
| 45 | 1270 | June-Reg | John Box | p | 17 | 6-3 | 180 | R | L | A+ | | Waltrip (Houston,TX) | |
| 46 | 1298 | June-Reg | Hiram Cruz | SS | | | | | | Rookie | | | |
| 47 | 1326 | June-Reg | Jeff Horn | C | 21 | 6-1 | 213 | R | R | AAA | | University of Wyoming | |
| 48 | 1354 | June-Reg | Paul Gomez | C | 19 | 5-11 | 190 | R | R | A+ | | North Florida Community College | |
| 49 | 1382 | June-Reg | Bryan Zollman | 3B | | | | | | - | | Hill-Murray (Maplewood,MN) | |
| 50 | 1410** | June-Reg | Craig Dingman | p | 18 | 6-4 | 215 | R | R | MLB | 2000-2005 | Wichita North (Wichita,KS) | |