| 1 | 5 | June-Reg | Jack McDowell | P | 21 | 6-5 | 190 | R | R | MLB | 1987-1999 | Stanford University | $165,000 |
| 2 | 37 | June-Reg | Brent Knackert | P | 17 | 6-3 | 185 | R | R | MLB | 1990-1996 | Ocean View (Huntington Beach,CA) | |
| 3 | 63 | June-Reg | Kinnis Pledger | OF | 18 | 6-4 | 220 | L | R | AAA | | National Park College | |
| 4 | 89 | June-Reg | Steve Schrenk | P | 18 | 6-3 | 190 | R | R | MLB | 1999-2000 | North Marion (Aurora,OR) | |
| 5 | 115 | June-Reg | Dan Rohrmeier | 3B | 21 | 6-0 | 185 | R | R | MLB | 1997-1997 | Saint Thomas University | |
| 6 | 141 | June-Reg | Jerry Kutzler | P | 22 | 6-1 | 175 | L | R | MLB | 1990-1990 | William Penn University | |
| 7 | 167 | June-Reg | Ed Smith | 3B | | | | | | AAA | | Pemberton Township (Pemberton,NJ) | |
| 8 | 193 | June-Reg | Bernardo Cruz | SS | | | | | | A+ | | Southview (Lorain,OH) | |
| 9 | 219** | June-Reg | Dan Gil | 3B | | | | | | A+ | | Francis Poly (Sun Valley,CA) | |
| 10 | 245 | June-Reg | Rob Lukachyk | SS | 18 | 6-0 | 185 | L | R | MLB | 1996-1996 | Brookdale Community College | |
| 11 | 270 | June-Reg | Ken Burroughs | P | | | | | | A- | | Northeast (St. Petersburg,FL) | |
| 12 | 296 | June-Reg | Buddy Groom | p | 21 | 6-2 | 207 | L | L | MLB | 1992-2005 | University of Mary Hardin-Baylor | |
| 13 | 322 | June-Reg | Dwayne Hosey | OF | 20 | 5-10 | 175 | B | R | MLB | 1995-1996 | | |
| 14 | 348 | June-Reg | Ed Walsh | 1B | | | | | | A+ | | Providence College | |
| 15 | 374** | June-Reg | Maurice Crum | 1B | | | | | | - | | Hillsborough (Tampa,FL) | |
| 16 | 400 | June-Reg | John Sabatino | p | | | | | | Rookie | | Lewis University | |
| 17 | 426 | June-Reg | Paul Fuller | C | | | | | | A+ | | USC | |
| 18 | 452 | June-Reg | Chris Hansen | p | | | | | | - | | Iona College | |
| 19 | 478 | June-Reg | Ray Payton | OF-1B | | | | | | A+ | | Southern University | |
| 20 | 504 | June-Reg | Brad Fella | p | | | | | | Rookie | | Indiana University | |
| 21 | 530 | June-Reg | Curt Hasler | p | 22 | | | | | AAA | | Bradley University | |
| 22 | 556 | June-Reg | Jesus Merejo | SS | | | | | | A- | | County College of Morris | |
| 23 | 582 | June-Reg | Brian Roberts | OF | | | | | | - | | Loara (Anaheim,CA) | |
| 24 | 608 | June-Reg | Franklin Harris | C | | | | | | A+ | | Jackson State University | |
| 25 | 634 | June-Reg | Virgil Cooper | p | | | | | | A | | Labette Community College | |
| 26 | 660 | June-Reg | Keith Harris | OF | | | | | | A | | Queensborough Community College | |
| 27 | 686 | June-Reg | Shaun Doyle | OF | | | | | | Rookie | | Cal State Dominguez Hills | |
| 28 | 712 | June-Reg | Dwight Thomas | 1B | | | | | | Rookie | | Dallas Baptist University | |
| 29 | 738** | June-Reg | Kerry Valrie | OF-2B | 18 | 5-10 | 195 | R | R | AAA | | Robertsdale (Robertsdale,AL) | |
| 30 | 764 | June-Reg | Mario Silva | 2B-3b | | | | | | Rookie | | American (Hialeah,FL) | |
| 31 | 790 | June-Reg | Derek Davis | OF | | | | | | - | | Simeon (Chicago,IL) | |
| 32 | 816 | June-Reg | Kevin Murdock | C | | | | | | A+ | | University of Wisconsin-Oshkosh | |
| 33 | 841 | June-Reg | Randy Warren | Of | | | | | | A | | Elon University | |
| 34 | 866 | June-Reg | Paul Colontino | Of | | | | | | Rookie | | Roosevelt (Brooklyn,NY) | |
| 35 | 891** | June-Reg | John Kroeger | C | | | | | | A | | Fairleigh Dickinson University | |
| 36 | 915 | June-Reg | John Morabito | Of-if | | | | | | Rookie | | Wake Forest University | |
| 37 | 938** | June-Reg | Brian Gennings | p | | | | | | A+ | | Queen City (Queen City,TX) | |
| 38 | 961** | June-Reg | Jeff Buell | 1B | | | | | | Rookie | | Indiana State University | |
| 39 | 983** | June-Reg | Phil Doyle | SS | | | | | | - | | Huffman (Birmingham,AL) | |
| 40 | 1004** | June-Reg | Lawrence Smith | SS | | | | | | A+ | | Bethune-Cookman University | |
