| 1 | 26 | June-Reg | Earl Sanders | P | 21 | 6-3 | 220 | R | R | AA | | Jackson State University | |
| 2 | 54 | June-Reg | Steve Cummings | P | 21 | 6-2 | 200 | B | R | MLB | 1989-1990 | University of Houston | |
| 3 | 81 | June-Reg | Andrew Dziadkowiec | C | 18 | 6-2 | 188 | L | R | AAA | | Quigley Prep (Chicago,IL) | |
| 4 | 107 | June-Reg | Xavier Hernandez | P | 20 | 6-2 | 195 | R | R | MLB | 1989-1998 | University of Louisiana at Lafayette | |
| 5 | 133 | June-Reg | Pat Hentgen | P | 17 | 6-2 | 195 | R | R | MLB | 1991-2004 | Fraser (Fraser,MI) | |
| 6 | 159 | June-Reg | Jerry Schunk | SS | | | | | | AAA | | University of Toledo | |
| 7 | 185** | June-Reg | Cris Carpenter | P | 21 | 6-1 | 185 | R | R | MLB | 1988-1996 | University of Georgia | |
| 8 | 211** | June-Reg | Jimmy Long | P | | | | | | A+ | | Oklahoma State University | |
| 9 | 237 | June-Reg | Rich DePastino | P | | | | | | A+ | | Riverview (Sarasota,FL) | |
| 10 | 263 | June-Reg | Randy Knorr | C-3B | 17 | 6-2 | 215 | R | R | MLB | 1991-2001 | Baldwin Park (Baldwin Park,CA) | |
| 11 | 289 | June-Reg | Willie Blair | P | 20 | 6-1 | 185 | R | R | MLB | 1990-2001 | Morehead State University | |
| 12 | 315 | June-Reg | Jose Salva | p | | | | | | - | | University of Louisiana at Lafayette | |
| 13 | 341** | June-Reg | Ron Lewis | SS | | | | | | - | | Raines (Jacksonville,FL) | |
| 14 | 367 | June-Reg | Carlos Diaz | C | 21 | 6-3 | 195 | R | R | MLB | 1990-1990 | Oklahoma State University | |
| 15 | 393 | June-Reg | Demetrius Smith | OF | | | | | | - | | Gardena (Gardena,CA) | |
| 16 | 419 | June-Reg | Jimmy Rogers | p | 19 | 6-2 | 190 | R | R | MLB | 1995-1995 | Seminole Community College | |
| 17 | 445 | June-Reg | John Shea | p | 20 | 6-6 | 210 | R | L | AAA | | University of Connecticut | |
| 18 | 471 | June-Reg | Jason Younker | OF | | | | | | - | | North Bend (Coos Bay,OR) | |
| 19 | 497 | June-Reg | James Moran | C | | | | | | - | | Saint Joseph's University | |
| 20 | 523** | June-Reg | Steve Surico | p | | | | | | - | | Tustin (Tustin,CA) | |
| 21 | 549 | June-Reg | Barry Shifflett | OF | | | | | | A- | | University of North Carolina-Charlotte | |
| 22 | 573 | June-Reg | Joseph Ward | p | | | | | | A- | | University of Rhode Island | |
| 23 | 597** | June-Reg | Tony Lewis | p | | | | | | A+ | | Pepperdine University | |
| 24 | 620 | June-Reg | Robert Watts | SS | | | | | | A+ | | West Virginia University | |
| 25 | 643 | June-Reg | Richard Ironside | C | | | | | | A- | | Nassau Community College | |
| 26 | 665** | June-Reg | Mark Beck | p | | | | | | - | | Mayfair (Lakewood,CA) | |
| 27 | 686 | June-Reg | Tom Quinlan | SS | 18 | 6-3 | 200 | R | R | MLB | 1990-1996 | Hill-Murray (Maplewood,MN) | |
| 28 | 706 | June-Reg | Darren Hall | p | 21 | 6-3 | 207 | R | R | MLB | 1994-1998 | Dallas Baptist University | |
| 29 | 726 | June-Reg | Bob Cavanaugh | p | | | | | | A- | | Central Michigan University | |
| 30 | 745 | June-Reg | Andy Wortham | p | | | | | | A+ | | University of California | |
| 31 | 760 | June-Reg | Pat Rosenbauer | p | | | | | | Rookie | | University of Toledo | |
| 32 | 775 | June-Reg | Ray McDonald | 3B | 21 | 6-3 | 200 | R | R | Rookie | | University of San Francisco | |
| 33 | 789** | June-Reg | Sherman Collins | p | | | | | | - | | University of Oklahoma | |
| 34 | 801 | June-Reg | Chris Woodfin | p | 18 | 6-1 | 190 | R | R | AA | | South Irondale (Statesville,NC) | |
| 35 | 812 | June-Reg | Gary Bockhorn | p | | | | | | - | | Southern Illinois University | |
| 36 | 823** | June-Reg | Warren Holt | p | | | | | | - | | Aptos (Aptos,CA) | |
| 37 | 834 | June-Reg | John Dolak | C | | | | | | - | | Palisades (Pacific Palisades,CA) | |
| 38 | 844 | June-Reg | Brian Goodwin | p | | | | | | - | | Frankfort (Frankfort,IN) | |
| 39 | 852** | June-Reg | Tommy Hardgrove | 1B | | | | | | Rookie | | Arlington Heights (Fort Worth,TX) | |
| 40 | 860 | June-Reg | Glenn BaxIey | 3B | | | | | | - | | Moreau Catholic (Hayward,CA) | |
| 41 | 866 | June-Reg | Steve Baistad | of | | | | | | - | | St. John Bosco (Bellflower,CA) | |
| 42 | 872 | June-Reg | Barry Morphew | SS | | | | | | Rookie | | Alexandria (Alexandria,IN) | |
| 43 | 878 | June-Reg | Doug Linton | p | 20 | 6-1 | 190 | R | R | MLB | 1992-2003 | University of California-Irvine | |
| 44 | 882** | June-Reg | David Freese | of | | | | | | - | | Springboro (Springboro,OH) | $0 |
| 1 | 16** | June-Sec | John Briscoe | P | 18 | 6-3 | 185 | R | R | MLB | 1991-1996 | Texarkana College | |
| 2 | 42** | June-Sec | David Keating | OF | 18 | 6-1 | 195 | R | L | AA | | UCLA | |
| 3 | 60 | June-Sec | Pat Mehrtens | P | | | | | | A+ | | Faulkner State Community College | |
| 4 | 75** | June-Sec | Andrew Nieman | P | | | | | | - | | Sinclair Community College | |
| 5 | 88** | June-Sec | Charlie White | OF | 19 | 6-0 | 195 | R | R | - | | Jefferson Davis Community College | |
| 6 | 96 | June-Sec | Scott Gerner | P | | | | | | - | | St. Mary's College of California | |
| 1 | 26 | Jan-Reg | Morgan Roderick | P | | | | | | A- | | Georgia Perimeter College | |
| 2 | 52 | Jan-Reg | Lindsay Foster | IF | 19 | 6-3 | 175 | B | R | AAA | | Louisburg College | |
| 3 | 78** | Jan-Reg | Pat Mehrtens | P | | | | | | A+ | | Faulkner State Community College | |
| 4 | 104 | Jan-Reg | David Black | P | | | | | | - | | St. Louis Community College-Meramec | |
| 5 | 130 | Jan-Reg | Mark Whiten | OF | 19 | 6-3 | 235 | B | R | MLB | 1990-2000 | Pensacola Junior College | |
| 6 | 156 | Jan-Reg | Peter Brown | P | | | | | | - | | Chipola College | |
| 7 | 182 | Jan-Reg | Chuck Johnson | IF | | | | | | - | | Laney College | |
| 8 | 207 | Jan-Reg | Michael Ordez | P | | | | | | - | | Merced College | |
| 9 | 232** | Jan-Reg | Wade Taylor | P | 20 | 6-1 | 185 | R | R | MLB | 1991-1991 | Jefferson Davis Community College | |
| 10 | 257** | Jan-Reg | Dean DeCillis | IF | 18 | 5-11 | 180 | R | R | AAA | | Miami-Dade College | |
| 11 | 277** | Jan-Reg | Greg Lonigro | IF | 20 | 6-1 | 180 | R | R | AAA | | Florida Community College | |
| 12 | 294** | Jan-Reg | Doug DeKock | C | | | | | | - | | Santa Fe Community College | |
| 13 | 309 | Jan-Reg | Vincent Davis | OF | | | | | | - | | Gulf Coast Community College | |
| 14 | 320 | Jan-Reg | Rodney Brooks | p | | | | | | - | | Lurleen B. Wallace Community College | |
| 15 | 329 | Jan-Reg | Glenn Moore | IF | | | | | | - | | Indian River State College | |
| 1 | 23** | Jan-Sec | Charlie White | OF | 19 | 6-0 | 195 | R | R | - | | Jefferson Davis Community College | |
| 2 | 44 | Jan-Sec | Bruce Powers | OF | | | | | | - | | Skyline College | |