| 1 | 22 | June-Reg | Rafael Palmeiro | OF | 20 | 6-0 | 190 | L | L | MLB | 1986-2005 | Mississippi State University | |
| 1 | 24 | June-Reg | Dave Masters | P | | | | | | AAA | | University of California | |
| 2 | 50** | June-Reg | Greg Smith | SS | 18 | 5-11 | 170 | B | R | MLB | 1989-1991 | Glenelg (Baltimore,MD) | |
| 3 | 76 | June-Reg | Mike Miller | C | | | | | | AA | | Paradise Valley (Phoenix,AZ) | |
| 4 | 102 | June-Reg | Roger Williams | P | | | | | | AAA | | University of North Carolina | |
| 5 | 128 | June-Reg | Rick Wrona | C | 21 | 6-1 | 185 | R | R | MLB | 1988-1994 | Wichita State University | |
| 6 | 154 | June-Reg | John Viera | OF | 17 | 6-1 | 170 | L | L | AAA | | | |
| 7 | 180 | June-Reg | Joe Murphy | 1B-OF | | | | | | A- | | Wagner College | |
| 8 | 206 | June-Reg | Bob Bafia | 3B | | | | | | AAA | | Fresno State University | |
| 9 | 232** | June-Reg | Kevin Tapani | P | 21 | 6-1 | 190 | R | R | MLB | 1989-2001 | Central Michigan University | |
| 10 | 258 | June-Reg | Greg Kallevig | P | | | | | | AAA | | South Dakota State University | |
| 11 | 284 | June-Reg | Bryan Anders | OF | | | | | | A | | Ohio Dominican University | |
| 12 | 310 | June-Reg | Doug Dascenzo | OF | 21 | 5-8 | 160 | B | L | MLB | 1988-1996 | Oklahoma State University | |
| 13 | 336 | June-Reg | Dick Canan | 3B | | | | | | AAA | | University of Illinois | |
| 14 | 362 | June-Reg | Fernando Zarranz | p | | | | | | AAA | | St. Thomas (Miami,FL) | |
| 15 | 388** | June-Reg | Sergio Espinal | 2B | | | | | | A | | Oklahoma State University | |
| 16 | 414 | June-Reg | Joe Kraemer | p | 20 | 6-2 | 185 | L | L | MLB | 1989-1990 | | |
| 17 | 440** | June-Reg | Don Burke | OF | | | | | | A+ | | Florida Southern College | |
| 18 | 466 | June-Reg | Robert Strickland | p | | | | | | AA | | University at Buffalo | |
| 19 | 492 | June-Reg | Mark McMorris | 1B | | | | | | A+ | | Southeastern Louisiana University | |
| 20 | 518 | June-Reg | Kelly Mann | C | 17 | 6-3 | 215 | R | R | MLB | 1989-1990 | Santa Monica (Santa Monica,CA) | |
| 21 | 544 | June-Reg | Len Damian | p | | 6-2 | 205 | R | R | AAA | | Canyon (Anaheim,CA) | |
| 22 | 570 | June-Reg | Jeff Hirsch | p | 20 | 6-4 | 218 | B | R | AAA | | UCLA | |
| 23 | 596 | June-Reg | Brent Addison | SS | | 5-10 | 160 | R | R | College | | Auburndale (Auburndale,FL) | |
| 24 | 622 | June-Reg | Mark Grace | 1B | 21 | 6-2 | 200 | L | L | MLB | 1988-2003 | San Diego State University | |
| 25 | 648 | June-Reg | Kris Roth | p | | | | | | AA | | Southwestern Oklahoma State University | |
| 26 | 674 | June-Reg | John Peet | 1B-OF | | | | | | - | | Santa Monica (Santa Monica,CA) | |
| 27 | 699 | June-Reg | Clint Harting | SS | | | | | | - | | Redlands (Redlands,CA) | |
| 28 | 722 | June-Reg | John Horn | p | | | | | | A- | | Georgia Tech | |
| 29 | 743 | June-Reg | Mark Jefferson | p | | | | | | Rookie | | North Marion (Farmington,WV) | |
| 30 | 763** | June-Reg | Bobby DeJardin | SS | | | | | | AAA | | Mater Dei (Santa Ana,CA) | |
| 31 | 778 | June-Reg | Tom Williams | 2B | 17 | 6-2 | 175 | R | R | - | | Elkton (Elkton,MD) | |
| 32 | 792 | June-Reg | Tim Wallace | 2B | 22 | 5-10 | 200 | R | R | AA | | Cal State East Bay | |
| 1 | 11 | June-Sec | Ron Ewart | 1B-OF | | | | | | A+ | | Cerritos College | |
| 2 | 37** | June-Sec | Robert Chadwick | P | | | | | | - | | Oxnard College | |
| 3 | 60** | June-Sec | Paul Kuzniar | P | | | | | | AA | | Alvin Community College | |
| 1 | 23 | Jan-Reg | Jeff Small | SS | 19 | 6-0 | 175 | R | R | AAA | | | |
| 2 | 49 | Jan-Reg | Lee Grimes | OF | | | | | | A+ | | Palm Beach Community College | |
| 3 | 75** | Jan-Reg | Daryl Boyd | P | | | | | | A+ | | Palm Beach Community College | |
| 4 | 101** | Jan-Reg | Ron Ewart | OF | | | | | | A+ | | Cerritos College | |
| 5 | 127** | Jan-Reg | Doug Kline | P | 19 | 6-3 | 206 | R | R | AAA | | Blue Mountain Community College | |
| 6 | 152 | Jan-Reg | Michael Jones | OF | | | | | | Rookie | | Miami-Dade College | |
| 7 | 176 | Jan-Reg | William O'Neal | 1B | | | | | | - | | University of Arkansas-Fort Smith | |
| 8 | 200 | Jan-Reg | Scott Lochow | C | | | | | | A- | | Edmonds Community College | |
| 9 | 223** | Jan-Reg | Tim Anderson | SS | | | | | | A+ | | Sacramento City College | |
| 10 | 244** | Jan-Reg | Gary Geiger | 3B-P | | | | | | A+ | | Seminole Community College | |
| 11 | 263** | Jan-Reg | Mike Siler | P | 20 | 6-0 | 185 | R | R | A+ | | Edmonds Community College | |
| 1 | 9** | Jan-Sec | Craig Worthington | 3B | 20 | 6-0 | 202 | R | R | MLB | 1988-1996 | Cerritos College | |
| 2 | 35** | Jan-Sec | Phil Williams | C | | | | | | - | | University of Oklahoma | |
| 3 | 58** | Jan-Sec | Glenn Twardy | OF | | | | | | A- | | Mount San Antonio College | |