| 1 | 6 | June-Reg | Barry Bonds | OF | 20 | 6-2 | 210 | L | L | MLB | 1986-2007 | Arizona State University | |
| 2 | 47 | June-Reg | Damon Hansel | C | | | | | | A | | Granite Hills (El Cajon,CA) | |
| 3 | 60 | June-Reg | Joe Klancnik | P | | | | | | A+ | | Niles West (Skokie,IL) | |
| 4 | 86 | June-Reg | Robin Vaughn | SS | | | | | | Rookie | | Crenshaw (Los Angeles,CA) | |
| 5 | 112 | June-Reg | Ondra Ford | OF | 17 | 6-2 | 180 | L | L | A+ | | Ontario (Ontario,CA) | |
| 6 | 138 | June-Reg | Brett Gideon | P | 21 | 6-2 | 200 | R | R | MLB | 1987-1990 | University of Mary Hardin-Baylor | |
| 7 | 164 | June-Reg | Tommy Gregg | OF | 21 | 6-1 | 190 | L | L | MLB | 1987-1997 | Wake Forest University | |
| 8 | 190 | June-Reg | Larry Melton | P | 22 | 6-4 | 200 | R | R | AAA | | University of Portland | |
| 9 | 216 | June-Reg | Terry Wakefield | OF | | | | | | Rookie | | Guthrie (Guthrie,OK) | |
| 10 | 242 | June-Reg | Jeff Cook | OF | | | | | | AAA | | Phillips University | |
| 11 | 268 | June-Reg | Desmond Scioneaux | 1B | | | | | | Rookie | | Montclair (Montclair,CA) | |
| 12 | 294 | June-Reg | Bill Sampen | p | 22 | 6-2 | 190 | R | R | MLB | 1990-1994 | MacMurray College | |
| 13 | 320** | June-Reg | Brad Robinson | OF-1B | | | | | | A | | Seminole Community College | |
| 14 | 346 | June-Reg | Kyle Todd | 3B | 22 | 6-0 | 185 | R | R | AA | | Baylor University | |
| 15 | 372 | June-Reg | Luis Ramos | SS | | | | | | - | | Georgia Southern University | |
| 16 | 398 | June-Reg | Ronnell Daniels | OF | | | | | | A- | | Utica College | |
| 17 | 424 | June-Reg | Brian Zanardelli | p | | | | | | - | | Robert Morris College | |
| 18 | 450 | June-Reg | Juan McWilliams | 3B | | | | | | A | | Grambling State University | |
| 19 | 476 | June-Reg | Richard Kiluk | OF | | | | | | A | | University of Massachusetts-Lowell | |
| 20 | 502 | June-Reg | John Shouse | C | | | | | | A- | | University of the Cumberlands | |
| 21 | 528 | June-Reg | Ray Gambino | SS | | | | | | A | | Point Park College | |
| 22 | 554 | June-Reg | Mark Koller | p | | | | | | A- | | Peabody (Pittsburgh,PA) | |
| 23 | 580 | June-Reg | Ralph Denkenberger | OF | | | | | | A | | Loch Raven (Baltimore,MD) | |
| 24 | 606 | June-Reg | Thomas Pierce | SS | | | | | | - | | Georgia Perimeter College | |
| 25 | 632 | June-Reg | Robert Benkert | C | | | | | | A+ | | William Paterson University of New Jersey | |
| 26 | 658 | June-Reg | Mark Oberholtzer | p | | | | | | A- | | Ohio Wesleyan University | |
| 27 | 683 | June-Reg | Tony Mealy | OF | | | | | | A | | Fayetteville (Fayetteville,WV) | |
| 28 | 708 | June-Reg | Kyle Channing | p | | 6-0 | 185 | L | L | A- | | Dallas Baptist University | |
| 29 | 730 | June-Reg | Lawrence Brady | OF | | | | | | A- | | Coastal Carolina University | |
| 30 | 751 | June-Reg | Brian Schaum | SS | | | | | | AA | | California University of Pennsylvania | |
| 31 | 769 | June-Reg | Buster Lopes | p | | | | | | - | | University of Notre Dame | |
| 32 | 783 | June-Reg | Greg Shirley | OF | | | | | | - | | Azusa Pacific University | |
| 33 | 797 | June-Reg | Scott Berry | OF | | | | | | A- | | University of the Cumberlands | |
| 34 | 809 | June-Reg | Page Odle | Of | | | | | | A+ | | Oral Roberts University | |
| 35 | 817 | June-Reg | Doug Smallwood | 3B | | | | | | Rookie | | Thomas Johnson (Frederick,MD) | |
| 36 | 822** | June-Reg | Tommy Shields | SS | 20 | 6-0 | 180 | L | R | MLB | 1992-1993 | University of Notre Dame | |
| 1 | 4** | June-Sec | Tommy Hinzo | SS | 21 | 5-10 | 170 | B | R | MLB | 1987-1989 | University of Arizona | |
| 2 | 30** | June-Sec | Jason Bridges | SS-3B | | | | | | - | | McLennan Community College | |
| 3 | 54 | June-Sec | Kirk Barry | OF | | | | | | A | | Mesa Community College | |
| 1 | 5** | Jan-Reg | Pat Gilbert | OF | | | | | | AA | | Columbia State Community College | |
| 2 | 31 | Jan-Reg | Steve Taylor | OF | | | | | | Rookie | | Henry Clay (Lexington,KY) | |
| 3 | 57** | Jan-Reg | David Miller | P | | | | | | AAA | | Camden County College | |
| 4 | 83 | Jan-Reg | Mike Stevanus | SS | | | | | | A+ | | Valencia Community College | |
| 5 | 109** | Jan-Reg | Troy Jackson | OF | | | | | | Rookie | | College of San Mateo | |
| 6 | 135** | Jan-Reg | Mitchell Ferrick | P | | | | | | Rookie | | Santa Rosa Junior College | |
| 7 | 160** | Jan-Reg | Barry Griffin | P | | | | | | A- | | North Idaho College | |
| 8 | 184 | Jan-Reg | Craig Heakins | C | | | | | | A | | Triton College | |
| 9 | 208** | Jan-Reg | Derek Lee | 3B | 18 | 6-1 | 200 | L | R | MLB | 1993-1993 | State College of Florida, Manatee-Sarasota | |
| 10 | 231 | Jan-Reg | James Warner | P | | | | | | - | | Allegany College of Maryland | |
| 11 | 251 | Jan-Reg | Keith Swartzlander | P | | | | | | A | | Allegheny College | |
| 12 | 268 | Jan-Reg | Tom Hoffman | p | | | | | | - | | Pensacola Junior College | |
| 13 | 282** | Jan-Reg | John Vuz | C | | | | | | A+ | | Keystone College | |
| 14 | 294** | Jan-Reg | Brian Warfel | OF | | | | | | A+ | | Labette Community College | |
| 1 | 19** | Jan-Sec | Greg Vaughn | OF | 19 | 6-0 | 202 | R | R | MLB | 1989-2003 | Sacramento City College | |
| 2 | 45 | Jan-Sec | Ken Rahming | OF | | | | | | Rookie | | Miami-Dade College | |
| 3 | 63 | Jan-Sec | Chris Ritter | P | | | | | | AA | | Baltimore City Community College | |
