| 1 | 26 | June-Reg | Randy Nosek | P | 18 | 6-4 | 215 | R | R | MLB | 1989-1990 | Chillicothe (Chillicothe,MO) | |
| 2 | 54 | June-Reg | Scott Carter | P | 18 | 6-3 | 195 | R | R | A+ | | Havelock (Havelock,NC) | |
| 3 | 80 | June-Reg | Steve Searcy | P | 21 | 6-1 | 185 | L | L | MLB | 1988-1992 | University of Tennessee | |
| 4 | 106 | June-Reg | Robert Friesen | P | | | | | | A | | Meridian (Meridian,ID) | |
| 5 | 132 | June-Reg | Gerry Wetherell | P | | | | | | A | | Mount Vernon Nazarene University | |
| 6 | 158 | June-Reg | Scott Lusader | OF | 20 | 5-10 | 165 | L | L | MLB | 1987-1991 | University of Florida | |
| 7 | 184 | June-Reg | Doug Strange | 2B | 21 | 6-1 | 188 | B | R | MLB | 1989-1998 | North Carolina State University | |
| 8 | 210 | June-Reg | Donnie Rowland | 2B | 22 | 5-10 | 165 | R | R | AAA | | University of Miami | |
| 9 | 236 | June-Reg | Derreck Bastinck | C | | | | | | A+ | | Ramapo College of New Jersey | |
| 10 | 262** | June-Reg | Lou Frazier | OF | 20 | 6-2 | 175 | B | R | MLB | 1993-1998 | Scottsdale Community College | |
| 11 | 288 | June-Reg | Ruben Jackson | OF | | | | | | A | | Cajon (San Bernardino,CA) | |
| 12 | 314 | June-Reg | Joe Slavik | p | | | | | | A+ | | Eastern Michigan University | |
| 13 | 340 | June-Reg | Alain Patenaude | p | 23 | 6-2 | 190 | | R | A | | University of Miami | |
| 14 | 366 | June-Reg | Doyle Balthazar | C | 17 | 6-2 | 180 | R | R | AA | | Los Angeles (Los Angeles,CA) | |
| 15 | 392 | June-Reg | Mark Lee | p | 20 | 6-5 | 220 | L | L | MLB | 1988-1995 | Florida International University | |
| 16 | 418 | June-Reg | Jeff Henderson | p | | | | | | - | | Stetson University | |
| 17 | 444 | June-Reg | Allen Liebert | C | 17 | 5-10 | 195 | L | R | AAA | | West (Waukegan,IL) | |
| 18 | 470** | June-Reg | Andy Stankiewicz | 2B | 20 | 5-9 | 165 | R | R | MLB | 1992-1998 | Pepperdine University | |
| 19 | 496 | June-Reg | Ted Lawrence | OF | | | | | | AA | | Pace University | |
| 20 | 522 | June-Reg | Ed Waylock | SS | | | | | | A+ | | Bradley University | |
| 21 | 548 | June-Reg | Ted Wiesfuss | SS | | | | | | - | | Chatsworth (Chatsworth,CA) | |
| 22 | 574 | June-Reg | John Smoltz | p | 18 | 6-3 | 220 | R | R | MLB | 1988-2009 | Waverly (Lansing,MI) | |
| 23 | 600 | June-Reg | Thelanious Prioleau | SS | | | | | | A+ | | Central State University | |
| 24 | 626 | June-Reg | Craig Good | p | | | | | | - | | Rio Mesa (Oxnard,CA) | |
| 25 | 652 | June-Reg | Thomas Knapp | OF | | | | | | Rookie | | Ferris State University | |
| 26 | 677 | June-Reg | Tom Snowberger | OF | | | | | | A | | University of Iowa | |
| 27 | 702** | June-Reg | Dan Disher | p | 21 | 6-2 | 190 | R | R | A+ | | University of Michigan | |
| 28 | 725 | June-Reg | Ken Gohmann | p | | | | | | AA | | Northwestern University | |
| 29 | 746** | June-Reg | Ken Deal | p | | 6-6 | 240 | R | R | - | | Trinidad State Junior College | |
| 30 | 766 | June-Reg | Steve Kern | 3B | | | | | | - | | Durfee (Fall River,MA) | |
| 31 | 781 | June-Reg | Adam Dempsay | C | | | | | | AAA | | Bradley University | |
| 32 | 795 | June-Reg | Rob Thomson | C | 21 | 6-0 | 200 | R | R | A+ | | University of Kansas | |
| 33 | 807 | June-Reg | Randy Kotchman | SS | | | | | | A+ | | Seminole (Seminole,FL) | |
| 1 | 26 | June-Sec | Pete Roberts | P | | | | | | - | | Mira Costa College | |
| 2 | 51** | June-Sec | David Miller | P | | | | | | AAA | | Camden County College | |
| 3 | 73 | June-Sec | Rob Hartwig | OF | | 6-0 | 180 | R | R | A+ | | Los Angeles Harbor College | |
| 4 | 85 | June-Sec | Kevin Ritz | P | 20 | 6-4 | 229 | R | R | MLB | 1989-1998 | Indian Hills Community College-Centerville | |
| 5 | 95 | June-Sec | Gary Alexander | P | | | | | | - | | Laney College | |
| 6 | 101** | June-Sec | Mike Sisco | SS | | | | | | A- | | St. Louis Community College-Meramec | |
| 7 | 104 | June-Sec | Tom Powers | P | | | | | | A+ | | Triton College | |
| 1 | 26 | Jan-Reg | Kenny Williams | P | 21 | 6-1 | 184 | R | R | MLB | 1986-1991 | | $160,000 |
| 2 | 52 | Jan-Reg | Paul Jackson | P-SS | | | | | | - | | Citrus College | |
| 3 | 78 | Jan-Reg | David Cooper | OF | 20 | 6-3 | 220 | R | R | AAA | | Macomb Community College | |
| 4 | 104** | Jan-Reg | Jerald Frost | SS | | | | | | A+ | | Ocean County College | |
| 5 | 130 | Jan-Reg | Frank Masters | C | | | | | | AA | | Scottsdale Community College | |
| 6 | 155 | Jan-Reg | Craig Burns | OF | | | | | | - | | Sacramento City College | |
| 7 | 179 | Jan-Reg | Robert Fassold | C | | | | | | - | | Mira Costa College | |
| 8 | 203 | Jan-Reg | Tyrone Boseman | SS | | | | | | - | | Montreat College | |
| 9 | 226** | Jan-Reg | Rodger Castner | P | 19 | 6-3 | 200 | R | R | A- | | Arizona Western College | |
| 10 | 247 | Jan-Reg | Daniel Cetnar | P | | | | | | - | | South Suburban College | |
| 11 | 265 | Jan-Reg | Steve Kovensky | P | | | | | | - | | Palomar College | |
| 12 | 279** | Jan-Reg | Scott Spurgeon | C-3B | 20 | 5-11 | 195 | R | R | A | | Labette Community College | |
| 13 | 292 | Jan-Reg | Gary Smith | p-1B | | | | | | - | | Brookdale Community College | |
| 14 | 302 | Jan-Reg | Donald Mire | OF | | | | | | - | | Citrus College | |
| 1 | 8 | Jan-Sec | Gary Pifer | P | | | | | | A+ | | Santa Ana College | |
| 2 | 34** | Jan-Sec | Ken Pennington | SS | | | | | | AA | | El Camino College | |
| 3 | 57 | Jan-Sec | Larry Cratsenberg | IF | | | | | | - | | Orange County Community College | |