| 1 | 9 | June-Reg | Duane Ward | P | 18 | 6-4 | 210 | R | R | MLB | 1986-1995 | Farmington (Farmington,NM) | |
| 2 | 37 | June-Reg | Joe Johnson | P | 20 | 6-2 | 195 | R | R | MLB | 1985-1987 | University of Maine | |
| 3 | 63 | June-Reg | Zane Smith | P | 21 | 6-2 | 195 | L | L | MLB | 1984-1996 | Indiana State University | |
| 4 | 89** | June-Reg | Randy Johnson | P | 18 | 6-10 | 230 | R | L | MLB | 1988-2009 | Livermore (Livermore,CA) | $0 |
| 5 | 115** | June-Reg | Mike Campbell | P | 18 | 6-3 | 210 | R | R | MLB | 1987-1996 | Newport (Bellevue,WA) | |
| 6 | 141 | June-Reg | Rich Thompson | OF | 23 | 6-3 | 225 | R | R | MLB | 1985-1990 | University of Texas | |
| 7 | 167 | June-Reg | Mike Knox | SS | | | | | | Rookie | | The Citadel | |
| 8 | 193 | June-Reg | Tracy Edwards | C | | | | | | Rookie | | Mesquite (Mesquite,TX) | |
| 9 | 219** | June-Reg | Ron Robicheaux | 1B | | | | | | A- | | Lafayette (Lafayette,LA) | |
| 10 | 245 | June-Reg | Dave Van Horn | 2B | | | | | | A+ | | University of Arkansas | |
| 11 | 271 | June-Reg | Dennis Lubert | P | | | | | | A+ | | University of South Carolina | |
| 12 | 297 | June-Reg | Tom Willerson | p | | | | | | A | | Springfield College | |
| 13 | 322 | June-Reg | Urban Meyer | SS | | | | | | Rookie | | St. John's (Ashtabula,OH) | |
| 14 | 348** | June-Reg | Doug Hodo | OF | | | | | | A- | | Churchill (San Antonio,TX) | |
| 15 | 374 | June-Reg | Jim Rivera | p | 20 | 6-3 | 225 | R | R | A+ | | North Carolina State University | |
| 16 | 400 | June-Reg | Dave Griffin | 1B | 20 | 6-1 | 205 | B | R | AAA | | Texas Wesleyan University | |
| 17 | 426 | June-Reg | Jeff Hentz | p | | | | | | Rookie | | La Salle University | |
| 18 | 452 | June-Reg | Bill Anderson | SS | | | | | | - | | Point Loma Nazarene University | |
| 19 | 478 | June-Reg | Tony Nuendorff | C-3B | | | | | | - | | Southwestern University | |
| 20 | 504 | June-Reg | Dale Chatham | p | | | | | | Rookie | | William Carey University | |
| 21 | 529 | June-Reg | Kurt Moody | p | | | | | | Rookie | | University of Missouri | |
| 22 | 554 | June-Reg | Chip Childress | SS-p | | | | | | AAA | | Lynchburg College | |
| 23 | 579 | June-Reg | Rusty Uresti | C | | | | | | Rookie | | University of Texas | |
| 24 | 604 | June-Reg | John Mortillaro | p | | | | | | AA | | Jacksonville State University | |
| 25 | 629 | June-Reg | Tom Reynolds | 3B | | | | | | Rookie | | Eastern Connecticut State University | |
| 26 | 654 | June-Reg | Preston Cash | OF | | | | | | Rookie | | Shorter College | |
| 27 | 678 | June-Reg | Allen Carden | 3B | | | | | | Rookie | | Northwest Whitfield (Tunnel Hill,GA) | |
| 28 | 701 | June-Reg | Steve Cranford | C-3B | | | | | | - | | Georgia Perimeter College | |
| 29 | 724 | June-Reg | James Morelock | p | | | | | | A+ | | Fayette County (Fayetteville,GA) | |
| 30 | 744 | June-Reg | David Morris | p | | | | | | AA | | University of West Georgia | |
| 31 | 761 | June-Reg | Mark North | p | | | | | | - | | Huffman (Birmingham,AL) | |
| 1 | 11** | June-Sec | John Bryant | OF | | | | | | AA | | Santa Ana College | |
| 2 | 36 | June-Sec | Ken Lynn | P | | | | | | A | | Spartanburg Methodist College | |
| 1 | 10 | Jan-Reg | Johnny Hatcher | OF | | | | | | AAA | | Yavapai College | |
| 2 | 36** | Jan-Reg | Larry Riddle | P | 20 | 6-0 | 195 | R | R | A+ | | Alvin Community College | |
| 3 | 62 | Jan-Reg | John Van Gennep | P | | | | | | Rookie | | | |
| 4 | 88 | Jan-Reg | Gregory Mayse | SS-3B | | | | | | Rookie | | Cecil College | |
| 5 | 114 | Jan-Reg | Greg Laniban | P | | | | | | - | | Brevard Community College | |
| 6 | 140 | Jan-Reg | James Thompson | OF | | | | | | Rookie | | Riverdale (Riverdale,GA) | |
| 7 | 165 | Jan-Reg | Gary Hall | OF | | | | | | A | | Reedley College | |
| 8 | 190** | Jan-Reg | David Grams | P | | | | | | - | | Mount San Antonio College | |
| 1 | 10 | Jan-Sec | Albert Candelaria | P | | | | | | A+ | | San Jose City College | |
| 2 | 35 | Jan-Sec | Mark Warren | OF | | | | | | Rookie | | American River College | |
