| 1 | 23 | June-Reg | Dave Leeper | OF | 21 | 5-11 | 170 | L | L | MLB | 1984-1985 | USC | |
| 2 | 34 | June-Reg | Mark Gubicza | P | 18 | 6-5 | 210 | R | R | MLB | 1984-1997 | William Penn Charter (Philadelphia,PA) | |
| 2 | 49 | June-Reg | Tony Ferreira | P | 18 | 6-1 | 160 | L | L | MLB | 1985-1985 | North (Riverside,CA) | |
| 3 | 74 | June-Reg | David Cone | P | 18 | 6-1 | 190 | L | R | MLB | 1986-2003 | Rockhurst (Kansas City,MO) | |
| 4 | 100** | June-Reg | Shane Mack | SS | 17 | 6-0 | 190 | R | R | MLB | 1987-1998 | Gahr (Cerritos,CA) | |
| 5 | 126 | June-Reg | Marty Wilkerson | 3B | | | | | | AAA | | USC | |
| 6 | 152 | June-Reg | Nick Harsh | P | 21 | | | | | AA | | San Diego State University | |
| 7 | 178 | June-Reg | John Davis | P | 18 | 6-7 | 215 | R | R | MLB | 1987-1990 | Centennial (Pueblo,CO) | |
| 8 | 204 | June-Reg | Warren Skelton | SS | | | | | | Rookie | | Harrison (Evansville,IN) | |
| 9 | 230** | June-Reg | John Bryant | P | | | | | | A- | | University of La Verne | |
| 10 | 256 | June-Reg | Randy Smith | OF | | | | | | Rookie | | Vallejo (Vallejo,CA) | |
| 11 | 282 | June-Reg | Warren Oliver | SS | | | | | | AA | | Texas Christian University | |
| 12 | 308** | June-Reg | Mark Williamson | p | 21 | 6-0 | 171 | R | R | MLB | 1987-1994 | San Diego State University | |
| 13 | 334 | June-Reg | Lex Bleckley | SS | | | | | | A- | | | |
| 14 | 360 | June-Reg | Robert Merenda | OF | | | | | | A- | | San Juan (Carmichael,CA) | |
| 15 | 386 | June-Reg | Stan Palmore | OF | | | | | | Rookie | | Chicago Vocational (Chicago,IL) | |
| 16 | 412 | June-Reg | Joe Citari | 1B | 17 | 6-2 | 195 | R | R | AAA | | Oak Park-River Forest (Oak Park,IL) | |
| 17 | 438** | June-Reg | Rich Rodriguez | p | 18 | 6-0 | 205 | L | L | MLB | 1990-2003 | Mountain View (El Monte,CA) | |
| 18 | 464** | June-Reg | Ken Spratke | p | | | | | | AAA | | Chippewa Valley (Clinton Township,MI) | |
| 19 | 490 | June-Reg | Tom Mohr | OF | | | | | | AA | | Rib Lake (Rib Lake,WI) | |
| 20 | 516 | June-Reg | Mitch Hawley | p | | | | | | Rookie | | University of California | |
| 21 | 542 | June-Reg | Tom Thompson | 1B | | | | | | A+ | | Georgia Tech | |
| 22 | 567 | June-Reg | Perry Swanson | p | | | | | | A+ | | Texas A&M University | |
| 23 | 592** | June-Reg | Pat Saitta | p | | | | | | A+ | | Salesian (Bronx,NY) | |
| 24 | 617 | June-Reg | Rick Plautz | OF | | | | | | A+ | | Grand Canyon University | |
| 25 | 641 | June-Reg | Marty Martino | OF | | | | | | A | | Indiana State University | |
| 26 | 664** | June-Reg | Jay Phillips | 2B | | | | | | A+ | | Virginia Tech | |
| 27 | 686 | June-Reg | Mark Bloomfield | p | | | | | | Rookie | | UNLV | |
| 28 | 708** | June-Reg | Mark Solz | OF | | | | | | A | | Santana (Santee,CA) | |
| 29 | 730 | June-Reg | Glen Gwaltney | OF | | | | | | - | | Sylvan Hills (Sherwood,AR) | |
| 30 | 749 | June-Reg | Meade Langhorne | OF | | | | | | Rookie | | University of Richmond | |
| 31 | 766 | June-Reg | Don Seeker | OF | | | | | | Rookie | | Miami University | |
| 32 | 782 | June-Reg | Bill Gaunce | C | | | | | | A+ | | William Carey University | |
| 33 | 796 | June-Reg | Allen Peake | 1B | | | | | | Rookie | | Stafford (Fredericksburg,VA) | |
| 34 | 809 | June-Reg | Richard Sielicki | p | 18 | 6-4 | 210 | R | R | Rookie | | Bothell (Bothell,WA) | |
| 1 | 21 | June-Sec | Reggie Wyatt | P | | | | | | AA | | | |
| 1 | 24 | Jan-Reg | Rick Rizzo | OF | | | | | | AAA | | Mesa State College | |
| 2 | 50 | Jan-Reg | Thomas McHugh | 1B | | | | L | R | A | | Iowa Western Community College | |
| 3 | 76 | Jan-Reg | James Brittman | 1B | | | | | | Rookie | | | |
| 4 | 102 | Jan-Reg | James Minor | P | | | | | | - | | Fullerton College | |
| 5 | 128 | Jan-Reg | Dave Johnson | P | 21 | 5-11 | 180 | R | R | MLB | 1987-1993 | Baltimore City Community College | |
| 6 | 153 | Jan-Reg | Tracy Hall | OF | | | | | | Rookie | | | |
| 7 | 178** | Jan-Reg | Russ Morman | OF | 19 | 6-4 | 215 | R | R | MLB | 1986-1997 | Iowa Western Community College | |
| 8 | 199 | Jan-Reg | Carl Davis | OF | | | | | | - | | | |
| 9 | 217 | Jan-Reg | Jeff Kobernus | P | | | | | | AA | | Laney College | |
| 10 | 234 | Jan-Reg | Bill Pecota | 3B | 21 | 6-2 | 195 | R | R | MLB | 1986-1994 | De Anza College | |
| 11 | 248 | Jan-Reg | John Antonelli | C | | | | | | A+ | | Baltimore City Community College | |
| 12 | 260 | Jan-Reg | David Spalt | SS | | | | | | Rookie | | Patterson (Baltimore,MD) | |
| 13 | 272 | Jan-Reg | Craig Stump | 3B | | | | | | - | | Baltimore City Community College | |
| 1 | 24 | Jan-Sec | Mitch Ashmore | OF | | | | | | AAA | | Centenary College | |
| 2 | 50 | Jan-Sec | Steven Anderson | 3B | | | | | | - | | West Los Angeles College | |
| 3 | 67 | Jan-Sec | John Stevens | P | | | | | | - | | Los Angeles Valley College | |