| 1 | 12 | June-Reg | Jon Perlman | P | 22 | 6-3 | 185 | L | R | MLB | 1985-1988 | Baylor University | |
| 2 | 38 | June-Reg | Shane Allen | IF | | | | | | A | | Palm Bay (Melbourne,FL) | |
| 3 | 64** | June-Reg | Chuck Crim | P | 17 | 6-0 | 185 | R | R | MLB | 1987-1994 | Thousand Oaks (Thousand Oaks,CA) | |
| 4 | 90 | June-Reg | Stan Kyles | P | | | | | | AAA | | Phillips (Chicago,IL) | |
| 5 | 116** | June-Reg | Steve Gehrke | P | | | | | | Rookie | | Murray (Murray,UT) | |
| 6 | 142 | June-Reg | James Buckley | SS | | | | | | - | | Lakewood (Lakewood,CA) | |
| 7 | 168 | June-Reg | Randy LaVigne | OF | | | | | | AAA | | University of Connecticut | |
| 8 | 194** | June-Reg | Tim Thompson | P | | | | | | A+ | | David Starr Jordan (Long Beach,CA) | |
| 9 | 220 | June-Reg | Thomas Morris | P | | | | | | A | | Brigham Young University | |
| 10 | 246 | June-Reg | Dave Owen | SS | 21 | 6-2 | 170 | B | R | MLB | 1983-1988 | University of Texas-Arlington | |
| 11 | 272 | June-Reg | Ray Soff | P | 20 | 6-0 | 185 | R | R | MLB | 1986-1987 | Central Michigan University | |
| 12 | 298 | June-Reg | James Lockett | OF | | | | | | Rookie | | University of Missouri | |
| 13 | 324 | June-Reg | Joe Flori | 2B | | | | | | A | | Point Park College | |
| 14 | 350 | June-Reg | Jack Upton | 1B-3b | | | | | | AAA | | Colorado State University | |
| 15 | 376 | June-Reg | Kirk Ortega | C | | | | | | A | | St. Francis College | |
| 16 | 402 | June-Reg | Tom Grant | OF | 22 | 6-2 | 190 | L | R | MLB | 1983-1983 | University of New Haven | |
| 17 | 428 | June-Reg | Brian Hardy | p | | | | | | A+ | | Brigham Young University | |
| 18 | 454 | June-Reg | Mark Schiewe | p | | | | | | A | | Buckley Loda (Paxton,IL) | |
| 19 | 480 | June-Reg | Craig Weissmann | p | | | | | | AA | | Clairemont (San Diego,CA) | |
| 20 | 506** | June-Reg | Bryan Oelkers | p | 18 | 6-3 | 192 | L | L | MLB | 1983-1986 | Pattonville (Maryland Heights,MO) | |
| 21 | 531 | June-Reg | Tim Millner | OF | | | | | | AA | | Illinois State University | |
| 22 | 556 | June-Reg | Robert Blyth | p | 22 | 6-1 | 190 | R | R | AAA | | Brigham Young University | |
| 23 | 581 | June-Reg | Mark Huismann | p | 21 | 6-3 | 195 | R | R | MLB | 1983-1991 | Colorado State University | |
| 24 | 605 | June-Reg | Sidney Smith | OF | | | | | | Rookie | | Patrick Henry (San Diego,CA) | |
| 25 | 629 | June-Reg | Michael Kelley | OF | | | | | | AA | | Mississippi State University | |
| 26 | 653 | June-Reg | Anthony Biafore | SS | | | | | | Rookie | | Monmouth College | |
| 27 | 676** | June-Reg | Joe Carter | p | 19 | 6-3 | 215 | R | R | MLB | 1983-1998 | Helix Charter (La Mesa,CA) | |
| 28 | 698 | June-Reg | Dennis Mork | OF | | | | | | AAA | | University of California-Riverside | |
| 29 | 719** | June-Reg | Steve Ziem | p | 17 | 6-2 | 210 | R | R | MLB | 1987-1987 | Banning (Banning,CA) | |
| 30 | 740 | June-Reg | Glenn Millhauser | OF | | | | | | A | | University of Northern Colorado | |
| 31 | 760 | June-Reg | Doug Huffman | p | | | | | | - | | North Carolina State University | |
| 32 | 778 | June-Reg | Michael Thompson | p | | | | | | AAA | | Fairleigh Dickinson University | |
| 33 | 796 | June-Reg | Dave Fabela | C | | | | | | - | | Aquinas (San Bernardino,CA) | |
| 34 | 813** | June-Reg | David McClure | C | | | | | | AA | | Kapaun-Mount Carmel (Wichita,KS) | |
| 35 | 824 | June-Reg | Richard Renwick | p | | | | | | A | | Babson College | |
| 36 | 833 | June-Reg | Phillip Belmonte | IF | | | | | | AA | | Azusa Pacific University | |
| 37 | 841 | June-Reg | Howie Shapiro | 2B | | | | | | A- | | University of Miami | |
| 38 | 848** | June-Reg | Wes Clements | Of-1B | 21 | 6-4 | 220 | R | R | AAA | | University of Arizona | |
| 39 | 854 | June-Reg | William Trapani | p | | | | | | Rookie | | Bellevue University | |
| 1 | 6 | June-Sec | Scott Fletcher | SS | 20 | 5-11 | 173 | R | R | MLB | 1981-1995 | Georgia Southern University | |
| 2 | 29 | June-Sec | Anthony Veith | 1B | | | | | | A- | | | |
| 3 | 49** | June-Sec | John Moller | P | | | | | | A+ | | Seton Hall University | |
| 4 | 61 | June-Sec | John Millholland | SS | | | | | | A | | Louisburg College | |
| 5 | 66 | June-Sec | James McManus | P | | | | | | A- | | University of Nebraska | |
| 6 | 69 | June-Sec | Pedro Bazan | OF | | | | | | AAA | | Central Arizona College | |
| 1 | 11 | Jan-Reg | Mark Wilkins | P | | | | | | A | | Eastern Michigan University | |
| 2 | 37 | Jan-Reg | David Means | OF | | | | | | - | | | |
| 3 | 63 | Jan-Reg | Steve Podraza | OF | | | | | | - | | Brookdale Community College | |
| 4 | 89 | Jan-Reg | Terry Austin | OF | | | | | | A+ | | Ranger College | |
| 5 | 113 | Jan-Reg | Michael Maack | P | | | | | | AA | | Miami-Dade College | |
| 6 | 137 | Jan-Reg | Michael O'Malley | P | | | | | | A+ | | Triton College | |
| 7 | 159 | Jan-Reg | Todd Wilson | P | | | | | | - | | Mount San Antonio College | |
| 1 | 9** | Jan-Sec | Mark Christy | P | | | | | | A+ | | Miami-Dade College | |